Gene PSPTO_4217 details

Gene Information

• Locus tag: PSPTO_4217
• Symbol: rnc
• ID: 1185897
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 4750298
• End bp: 4750987
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637395563
• Product: ribonuclease III
• Protein accession: NP_793978
• Protein GI: 28871359
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.186649
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGTAT CCCTGAGCCG CCTTGAGCGT CAGCTCGGCT ACACCTTCAA GGATCAGGAA 
CTGATGATCC TGGCCCTGAC CCACCGCAGT TTTGCCGGTC GCAACAACGA GCGTCTGGAG 
TTTCTAGGTG ATGCCATCCT CAATTTCGTG GCGGGCGAAG CGTTGTTCGA GCGCTTCCCT 
CAGGCCCGCG AAGGTCAGTT GTCCCGTTTG CGAGCGCGGC TGGTCAAGGG CGAAACCCTG 
GCGTTGCTGG CGCGTGGCTT TGATCTGGGC GAGTACCTGC GCCTGGGCTC CGGCGAGCTG 
AAAAGCGGTG GCTTCCGTCG CGAGTCCATT CTGGCTGACG CCCTTGAGGC GCTGATCGGA 
GCGATCTACC TCGATGCAGG CATGGAAGCG GCGCGCGAGC GTGTGCTGGC CTGGCTGACG 
ACCGAGTTCG ACAGCCTGAC GCTGGTGGAC ACCAACAAGG ACCCCAAGAC CCGACTGCAG 
GAATTTCTCC AGTCGCGGGC CTGCGACCTG CCGCGCTACG AAGTGGTGGA TATCCAGGGC 
GAGCCGCATT GCCGGACGTT TTTCGTCGAA TGCGAGATCA ACCTATTGAA TGAAAAGAGC 
CGAGGACAGG GTGTCAGCCG CCGGATTGCC GAACAGGTAG CCGCCGCAGC AGCACTCATC 
GCCCTGGGCG TGGAGAACGG TCATGAATGA 

 

Protein sequence

MSVSLSRLER QLGYTFKDQE LMILALTHRS FAGRNNERLE FLGDAILNFV AGEALFERFP 
QAREGQLSRL RARLVKGETL ALLARGFDLG EYLRLGSGEL KSGGFRRESI LADALEALIG 
AIYLDAGMEA ARERVLAWLT TEFDSLTLVD TNKDPKTRLQ EFLQSRACDL PRYEVVDIQG 
EPHCRTFFVE CEINLLNEKS RGQGVSRRIA EQVAAAAALI ALGVENGHE