Gene PSPTO_4182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4182 
Symbol 
ID1185862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4712006 
End bp4713097 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content60% 
IMG OID637395528 
ProductD-alanine--D-alanine ligase 
Protein accessionNP_793943 
Protein GI28871324 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes 
TIGRFAM ID[TIGR01205] D-alanine--D-alanine ligase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.512251 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAAAAGT CAGTCGCCAT CGTTTTCGGT GGGCAATCCA GCGAGCATGA GGTTTCGTTG 
CAGTCTGCAC GCAACGTGAT CAATGCGATT GATCGTGAAA GCTATGCATT GACGCTGATC
GGCGTCGACA AGCTGGGCCG TTGGCTGCGT TTCGACGAGG CCGATTACCT GCTCAATGCC
AATGACCCTG CGCGGATCAA GCTGAGCGGT TCGGGCAAGC AGTTGTCGTT GCTGCCCGGC
AGTGTGGGCG GGCAGTTTGT CGAGGTCGAG TCGGGCAAGC CGCTGGCGGC CATCGATGTG
GTCTTTCCGC TGATCCACGG CGCGTTCGGC GAAGACGGCG CGTTGCAAGG CCTGTTGCGT
ATGCTGGCTG TTCCTTTCGT GGGCGCCGAC GTGCTCGCTT CTGCGGCGTG CATGGACAAG
GACGTGACCA AGCGCCTGTT GCGTGATGCC GGCATTGCCG TTGCGCCGTT TATGGTGCTG
AACCGTGGCG AAAGCCTTTC GTTCGCGCAG GCGGCTGCGC AGTTGAGCCT GCCGATGTTC
GTCAAACCTG CCAATCAGGG GTCATCGGTG GGTGTCAGCA AAGTATCTGA CGAGGCGGGT
TTCGCTGCGG CACTGGCGTT GGGTTTCGAG TTCGATCACA AGCTGCTGAT CGAGCAGGGC
ATCGTCGGCA GGGAAGTGGA ATGCGCCGTG CTGGGCAATG ATGAGGCGCA AGTCAGTGTT
TGCGGTGAAG TCGTCGCCAA CGACGAATTC TATGCCTACG ACACCAAGTA CCTGAACGGT
GATCAGGCGC GCATCGCCAT ACCCGCCGAG CTGCCTGCCG ACCTGAGCGA TCAGGTGCGT
GACGTTGCGC TACAGGCTTA CAAAGTGCTG GGTTGCGCGG GGCTGTCACG GGTCGACTTT
TTCGTCACCG AGGCGCGTGA AATCATCATC AACGAGGTCA ACACGCTTCC CGGCTTCACC
TCGATCAGCA TGTACCCCAA GCTCTGGCAG GCCACCGGTC TGAGCTATGC CGAACTGATC
CATCGCCTGA TCGTTCTGGC CCTGGAGCGT GCAGACGAAG CGCGCCTGCT GAAAAGGGAC
ATTTTTGCAT GA
 
Protein sequence
MKKSVAIVFG GQSSEHEVSL QSARNVINAI DRESYALTLI GVDKLGRWLR FDEADYLLNA 
NDPARIKLSG SGKQLSLLPG SVGGQFVEVE SGKPLAAIDV VFPLIHGAFG EDGALQGLLR
MLAVPFVGAD VLASAACMDK DVTKRLLRDA GIAVAPFMVL NRGESLSFAQ AAAQLSLPMF
VKPANQGSSV GVSKVSDEAG FAAALALGFE FDHKLLIEQG IVGREVECAV LGNDEAQVSV
CGEVVANDEF YAYDTKYLNG DQARIAIPAE LPADLSDQVR DVALQAYKVL GCAGLSRVDF
FVTEAREIII NEVNTLPGFT SISMYPKLWQ ATGLSYAELI HRLIVLALER ADEARLLKRD
IFA