Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4182 |
Symbol | |
ID | 1185862 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4712006 |
End bp | 4713097 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395528 |
Product | D-alanine--D-alanine ligase |
Protein accession | NP_793943 |
Protein GI | 28871324 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.512251 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAAAGT CAGTCGCCAT CGTTTTCGGT GGGCAATCCA GCGAGCATGA GGTTTCGTTG CAGTCTGCAC GCAACGTGAT CAATGCGATT GATCGTGAAA GCTATGCATT GACGCTGATC GGCGTCGACA AGCTGGGCCG TTGGCTGCGT TTCGACGAGG CCGATTACCT GCTCAATGCC AATGACCCTG CGCGGATCAA GCTGAGCGGT TCGGGCAAGC AGTTGTCGTT GCTGCCCGGC AGTGTGGGCG GGCAGTTTGT CGAGGTCGAG TCGGGCAAGC CGCTGGCGGC CATCGATGTG GTCTTTCCGC TGATCCACGG CGCGTTCGGC GAAGACGGCG CGTTGCAAGG CCTGTTGCGT ATGCTGGCTG TTCCTTTCGT GGGCGCCGAC GTGCTCGCTT CTGCGGCGTG CATGGACAAG GACGTGACCA AGCGCCTGTT GCGTGATGCC GGCATTGCCG TTGCGCCGTT TATGGTGCTG AACCGTGGCG AAAGCCTTTC GTTCGCGCAG GCGGCTGCGC AGTTGAGCCT GCCGATGTTC GTCAAACCTG CCAATCAGGG GTCATCGGTG GGTGTCAGCA AAGTATCTGA CGAGGCGGGT TTCGCTGCGG CACTGGCGTT GGGTTTCGAG TTCGATCACA AGCTGCTGAT CGAGCAGGGC ATCGTCGGCA GGGAAGTGGA ATGCGCCGTG CTGGGCAATG ATGAGGCGCA AGTCAGTGTT TGCGGTGAAG TCGTCGCCAA CGACGAATTC TATGCCTACG ACACCAAGTA CCTGAACGGT GATCAGGCGC GCATCGCCAT ACCCGCCGAG CTGCCTGCCG ACCTGAGCGA TCAGGTGCGT GACGTTGCGC TACAGGCTTA CAAAGTGCTG GGTTGCGCGG GGCTGTCACG GGTCGACTTT TTCGTCACCG AGGCGCGTGA AATCATCATC AACGAGGTCA ACACGCTTCC CGGCTTCACC TCGATCAGCA TGTACCCCAA GCTCTGGCAG GCCACCGGTC TGAGCTATGC CGAACTGATC CATCGCCTGA TCGTTCTGGC CCTGGAGCGT GCAGACGAAG CGCGCCTGCT GAAAAGGGAC ATTTTTGCAT GA
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Protein sequence | MKKSVAIVFG GQSSEHEVSL QSARNVINAI DRESYALTLI GVDKLGRWLR FDEADYLLNA NDPARIKLSG SGKQLSLLPG SVGGQFVEVE SGKPLAAIDV VFPLIHGAFG EDGALQGLLR MLAVPFVGAD VLASAACMDK DVTKRLLRDA GIAVAPFMVL NRGESLSFAQ AAAQLSLPMF VKPANQGSSV GVSKVSDEAG FAAALALGFE FDHKLLIEQG IVGREVECAV LGNDEAQVSV CGEVVANDEF YAYDTKYLNG DQARIAIPAE LPADLSDQVR DVALQAYKVL GCAGLSRVDF FVTEAREIII NEVNTLPGFT SISMYPKLWQ ATGLSYAELI HRLIVLALER ADEARLLKRD IFA
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