Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4128 |
Symbol | |
ID | 1185808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4651186 |
End bp | 4653621 |
Gene Length | 2436 bp |
Protein Length | 811 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395474 |
Product | TonB-dependent siderophore receptor |
Protein accession | NP_793889 |
Protein GI | 28871270 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCGCT CGTTAGACAC CCTTCTGCGC CCCAGTCTTC TGGCGATGGC GATTGCCCTG TGCACGCCGC TGGTCAGCCC GCTGTTGATG GCTGCGCAAC AGACCAGCGT TGTTGCCTAC GACCTGCCTG CAGGGGCCTT GCCGACCACA TTGAATCAGA TCGCCAGCCA GAGTGGCCTA GCACTGAGCC TTGATCCTGC GCTGGTTGCC GGCAAAACGA GCTCGCCGGT GAAGGGCAGT TTCGATGCGC CGGGTGCCCT GCGGGAAGCG TTGCGTGGCA GTGGCTTGCA ATTGGTGCAA AGCAGCGTCG GGACCTACAC GCTGATGGTC ATGGAGCAGA ACGCCCTGAA CCTGTCGGAC GTCAATATCA ACGCCAGCAG CGCACCTTTA GAAGGCTCGG AAGCGGCAGG TTATCGCAGC GAAAACATCA GCAGTGTCGG CGCGCTGGGC GGCATGAAGT TGCAGGACGC GCCGTATTCC ATCAGCGTGA CACCCCGGGC TCTGCTGAAA AACATTCAAG CCACCTCGCT GGACGATGTC ATCAAGCACA ACCCGTTCAC CCAGATGTAC TCGCCGACCA GCGCCGGTTA CGCCAGTGCC GTCAATATTC GCGGTTTCAG CAGTTCTGGC AGTCTGAACA TCGCCAATGA CGGCCTGCGC TTTACCAACG GTGCCGATGG CAGCAACTAC ATTGAAGAGA TGGAGCAACT GGAAGTCATC ACCGGCCTGA CCGGCTTCCT GTACGGCCCG GCCTCACCGG GCGGGCTGGT CAACTACGTC ATCAAACGCC CCACCTATGA GCGCTACAAC AGCGTCACCC TGGGCAATGC CGGTGGCGAA AACTACTACC TGCATGGCGA TTTCGGCGGG CCGATCGACA GTGAAGGCAA ATTCGCCTAT CGCCTCAACG TGCTGACCCA GGACGGCGAA ACCGCCGTTG ATATGAACAA GCGCCGTCGT GAAATGATTT CCCTGGCGCT GGACTGGAAC GTCTCCGATG ACCTGCTGGT GCAGTTCGAC GCCTCGCACA AGAAAACCCA GATTCGCGGT CTGACCAGTT ACTGGTATTT CAACGACCAG TCCTTGCGCC CCAGTGCGGC GTCGCTGGAC AACGACAAGC TCTACAGCCA GAAATGGTCG TTTTCCGATT ACGAGTCAGA CAAGGCGGGC GTACGCGCCA AATGGCGTCT GAATGACACC TTCACCTTGC GCGCAGCGTT CGCGGCTCAG CAGTACACGT CGGAAAACAC CTACACCGGG CCGACGGTCT CCAGCGCAGG CGTGCACTCG CAGCCGCTGT ACGCTTTCGC CCCGATTGAG ACCGAAGAAA AGACCGGCTC GCTGTTTCTG GATGCCGCAT TCGATACCGG CTTTCTTGGC CACAAAGTCA CCTTTGGTTA TCAGGGCAAT ACGTCTCGCC AAAAACAGTA CGAGGACCAC GTCCCGTACA CGCCTGCTCA GCCCGGCCCG CAATACACCT CGCCGGTCGG CACGATCCCG CTGGACCAGA CCCCTCAGGT CGGTAAGCCG TCCTACTCGA TTGGTCACGG CAACCAGCGC CTGGCCAATA GCACGCAGAG CAACAACTTC CTGATCGGCG ACGTCATCAC CTTCAACGAG CAATGGTCGG CGATTCTTGG TGTGACCAAC ACGCAGATCA AGACCTACGC CAATGAGTTC GTTTACGCCA AGGCATTCGG CTCGGCTGAA ACCGAGACTA AATACGATGA AAGCAAAACC TCGCCGAATA TCTCGCTGGT CTACAAGCCG CTGCCGTGGC TGACCACCTA CGCGACCTAT ATAGAAGGCC TGCAAGCCGG AGGCATCGCG CCAAGCGGCA CCGCCAACGC CGGTCAGGCT TTTGCGCCTG AAGTCAGCGA GCAGTATGAA ATCGGCGCCA AGGCGACGCT GGGTGAAACA CTGTTCACTC TCGCGCTGTT CAATATCGAG AAGCCCAACG GCTACACCAC GGGCGGGAAT ATCTACGTGG TGGACGGGCG TCAGGAAAAC AACGGGCTGG AGTTCAGCGT GACCGGCAAA GTCATTCCGG AACTGACGCT GGTCGGCGGT TTCACCTTGC TGGACCCGAA GATCAAGAAA ACCGGCGTGT CAGAGGATGA AGGTAACGTG CCCACCAATG TCGCCAAGCA ACTGGCCAAG GTCTATGCCG AATACGACAT CAATCAGATG CCGGGCCTGG CCATGACCGG CGGCGCGTTC TTTACCGGCA AACAATATAC CGACCAAAGC AACGAAAACG ACCTGCCGTC CTTCACCACC TTCGACGCCG GCGCGCGTTA CCGCATGCGC GTCTCGGAAA ATGACCTGAC CTTGCGGGTC AACGTCAGCA ACCTGGCCAA CAAGGAATAC TGGCTCAACA GCAGCTACCT GGGCGACCCG CGCACCGTCG CGTTCTCGGC GCAGCTGGAG TTTTGA
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Protein sequence | MSRSLDTLLR PSLLAMAIAL CTPLVSPLLM AAQQTSVVAY DLPAGALPTT LNQIASQSGL ALSLDPALVA GKTSSPVKGS FDAPGALREA LRGSGLQLVQ SSVGTYTLMV MEQNALNLSD VNINASSAPL EGSEAAGYRS ENISSVGALG GMKLQDAPYS ISVTPRALLK NIQATSLDDV IKHNPFTQMY SPTSAGYASA VNIRGFSSSG SLNIANDGLR FTNGADGSNY IEEMEQLEVI TGLTGFLYGP ASPGGLVNYV IKRPTYERYN SVTLGNAGGE NYYLHGDFGG PIDSEGKFAY RLNVLTQDGE TAVDMNKRRR EMISLALDWN VSDDLLVQFD ASHKKTQIRG LTSYWYFNDQ SLRPSAASLD NDKLYSQKWS FSDYESDKAG VRAKWRLNDT FTLRAAFAAQ QYTSENTYTG PTVSSAGVHS QPLYAFAPIE TEEKTGSLFL DAAFDTGFLG HKVTFGYQGN TSRQKQYEDH VPYTPAQPGP QYTSPVGTIP LDQTPQVGKP SYSIGHGNQR LANSTQSNNF LIGDVITFNE QWSAILGVTN TQIKTYANEF VYAKAFGSAE TETKYDESKT SPNISLVYKP LPWLTTYATY IEGLQAGGIA PSGTANAGQA FAPEVSEQYE IGAKATLGET LFTLALFNIE KPNGYTTGGN IYVVDGRQEN NGLEFSVTGK VIPELTLVGG FTLLDPKIKK TGVSEDEGNV PTNVAKQLAK VYAEYDINQM PGLAMTGGAF FTGKQYTDQS NENDLPSFTT FDAGARYRMR VSENDLTLRV NVSNLANKEY WLNSSYLGDP RTVAFSAQLE F
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