Gene PSPTO_4116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4116 
SymbolpdxH 
ID1185796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp4640275 
End bp4640922 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content59% 
IMG OID637395462 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionNP_793877 
Protein GI28871258 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.225541 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCAGA CCCTGGCCGA CATGCGCCGC GATTACACGC GCGACGGGTT GACCGAAGCG 
CAGTCGCCGC AAGAGCCGTT TGCGCTGTTC CACACCTGGT TTGAAGAAGC AGTGAAAACC 
GAGCAACCAC CGGTCGAGGC CAACGCCATG ACCCTGGCCA CGGTCGATGA GGAAGGACGC 
CCCCATTGCC GGGTTTTGCT ACTAAAGGGG CTTGATGCTC AGGGCTTTAC CTTCTTCACC 
AACTACGAAA GCGCCAAGGG TCGGCAATTG GCCGCACATC CATTCGCGGC CATGACTTTC 
TTCTGGCCAG CGCTGGAGCG TCAGGTGCGT ATTGAAGGCC GGGTCGAAAA GGTCAGCGCT 
CAGGAGTCCG ACGCTTATTA CCAGGTACGC CCGTTGGGCA GTCGTCTTGG CGCATGGGCA 
TCGCCGCAAA GCCGGGTGAT TGCCGATCGC GACGAACTGG AAGGCTTGAT CAGACAGACG 
GAACAACGCT TCGCAGACAC CCAGCCACAC TGCCCCGAGC ACTGGGGTGG CTACCGTCTT 
TTGCCAGAGC GAATCGAGTT TTGGCAGGGA AGATCCAGTC GCCTTCACGA CCGTTTGAAC 
TATCGTTTGA TAAACGCCAA ATGGGCACGC GAGCGTCTTG CCCCCTGA
 
Protein sequence
MTQTLADMRR DYTRDGLTEA QSPQEPFALF HTWFEEAVKT EQPPVEANAM TLATVDEEGR 
PHCRVLLLKG LDAQGFTFFT NYESAKGRQL AAHPFAAMTF FWPALERQVR IEGRVEKVSA 
QESDAYYQVR PLGSRLGAWA SPQSRVIADR DELEGLIRQT EQRFADTQPH CPEHWGGYRL 
LPERIEFWQG RSSRLHDRLN YRLINAKWAR ERLAP