| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4104 |
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| Symbol | |
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| ID | 1185784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4623994 |
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| End bp | 4626840 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395450 |
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| Product | ATP-dependent helicase hepA , putative |
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| Protein accession | NP_793865 |
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| Protein GI | 28871246 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAGC AGTATCAACC GGGGCAACGC TGGATTAGTG ACAGCGAAGC CGAGCTGGGT
TTAGGCACCG TTCTGGCACA GGACGGCCGC TTGTTGACCG TGCTCTATCC GGCCACTGGC
GAGACGCGCC AGTACGCACT GCGTAATGCG CCGCTGACCC GCGTGCGCTT CTCGCCGGGC
GATGTGATCA CGCACTTCGA AAACTGGAAG ATGACCGTTC GCGAAGTCGA CGATGTCGAC
GGCCTGCTGG TGTACCACGG CCTGAACGCG CAGAACGAAG TGGTCACGCT GCCGGAAACC
CAACTGTCGA ACTTCATCCA GTTCCGCCTG GCGACCGACC GTCTGTTCGC GGGCCAGATC
GACCAGTTGT CGTGGTTTTC GCTGCGCTAC AACACGCTTG AGCACACCAG CCGCCAGTTG
CAGTCCTCGC TTTGGGGCCT GGGTGGCGTG CGTGCGCAAC CTATTGCGCA CCAATTGCAC
ATCGCCCGGG AAGTCGCCGA CCGCATCGCG CCACGCGTAT TGCTGGCCGA CGAAGTGGGT
TTGGGCAAGA CCATCGAAGC CGGCCTGGTG ATTCATCGCC AGTTGCTGTC GGGGCGCGCC
AACCGCGTGC TGATTCTGGT TCCGGAAAAC CTCCAGCACC AGTGGCTGGT GGAGATGCGC
CGCCGCTTCA ACCTGCAGGT TGCGCTGTTC GACGCCGAAC GCTTCATGGA AAGCGATGCC
GGCAACCCGT TTGAAGACAC CCAACTGGCG CTGGTTGCGC TGGAATGGCT GGTCGAAGAC
GAAAAGGCGC AGGACGCCCT GTTCGCGGCG GGCTGGGACC TGATGGTGGT CGACGAAGCG
CACCACCTGG TCTGGCACGA AGAAAAGGCC AGCCGTGAAT ACTCGCTGGT CGAACAACTG
GCCGAGGTCA TTGCCGGCGT ACTGCTGCTG ACCGCAACGC CAGAACAACT GGGCCAGGAC
AGCCACTTCG CCCGCCTGCG CCTGCTCGAC CCGAACCGTT TCCACGACCT GAAAGCCTTC
CGCGCCGAGA GCGAAAACTA TCGCCCGGTG GCTCAGGCCG TTCAGGAACT GCTCGACAAG
GGCAAATTGT CCGCTGCGGC GCAGAAGACC ATCCACGGGT TCCTCGGTGC CGAAGGTGAC
ACCTTGCTCG CGGCGGTCAA TGCCGGCGAC GACGAAGCCA AGGCACGTCT GATTCGCGAA
CTGCTGGACC GTCACGGCAC CGGCCGCGTG CTGTTTCGCA ACACCCGCGC CGCCGTGCAG
GGCTTCCCGG AGCGCAAACT GCATCAATAC CCGCTGCCCT GCCCTGTTGA ATACCTTGAA
CTGCCGGTTG GCGAGCACGC CGATCTTTAC CCCGAAGTGA GTTTCCAGTC GCAGTCGGAT
GCCAGCGAAG AGGAGCGCTG GTGGCGCTTT GACCCACGCG TCGAATGGCT GATCGACACG
CTCAAGATGC TCAAGCGCGT CAAGGTGCTG GTCATCTGTG CTCACGCTGA AACCGCCATG
GACCTGGAAG ACGCGCTGCG CGTGCGCTCC GGCATTCCGG CCACAGTGTT CCACGAAGGC
ATGAACATCC TTGAGCGCGA CCGCGCCGCA GCCTATTTTG CGGACGAAGA GTTTGGCGCT
CAGGTACTGA TCTGTTCGGA AATCGGCAGC GAAGGCCGCA ACTTCCAGTT TTCCCACCAT
CTGGTCCTGT TCGACCTGCC GTCGCACCCG GACCTGCTGG AACAGCGCAT CGGGCGTCTG
GACCGGATCG GCCAGAAACA CGTCATCGAG CTGCACGTGC CATTCCTGGA GACCAGCCCC
CAGGCGCGTC TGTTCCAGTG GTATCACGAA GCGCTCAATG CGTTCCTCAA CACCTGCCCG
ACCGGTAACG CGCTGCAGCA TCAGTTTGGA CCGCGCCTGT TGCCCTTGCT GGAAAGCGGT
GACGACGATG AGTGGCAGAG CCTGATCGAT GAAGCCCGCA GCGAGCGCGA GCGTCTGGAA
AGCGAGCTGC ACACTGGCCG CGACCGGCTG CTGGAGCTCA ACTCCGGTGG TGCTGGCGAA
GGTGAGGCAC TGGTTGAGGA TATTCTCGAA CAGGACGATC AGTTCAGCCT GCCGATCTAC
ATGGAAACCC TGTTCGACGC CTTTGGCATC GACAGCGAAG ACCACTCGGA AAATGCCCTG
ATCCTCAAGC CGAGCGAGAA GATGCTCGAC GCCAGCTTCC CGCTGGGCGA CGACGAAGGC
GTGACCATCA CGTACGACCG CAATCAGGCA CTGTCTCGTG AAGACATGCA GTTCATCACC
TGGGAACACC CGATGGTCCA GGGCGGCATG GACCTGGTGC TGTCCGGTTC GATGGGCAAC
ACGGCGGTGG CACTGATCAA GAACAAGGCG CTCAAGCCGG GTACTGTGCT GCTGGAGCTG
ATTTACGTCA GCGAAGTGGT CGCGCCGCGC TCATTGCAAC TGGGACGCTA CCTGCCGCCT
GCTGCACTGC GCTGCCTGCT CGACGCAAAT GGCAACGATC TGTCGAGCCG TGTCTCGTTC
AATACCCTGA ACGATCAGCT TGAAAGTGTG CCACGCGCCA GCGCCAACAA GTTCATCCAG
GCGCAGCGTG ATCAGCTGAC CCCGAGGATC AACGCAGGCG AAGAGAAAAT CACTCCCAAG
CACGCTGAAC GCGTGGCCGA AGCACAACGC CGTCTGGCAG CCGACACCGA AGAGGAACTG
GCACGTCTGA CCGCTTTGCA GGCGGTCAAC CCTACCGTGC GTGACAGCGA ACTGGTCGCC
TTGCGCACTC AGCGCGAACA AGGTCTGGCG ATGCTTGAAA AAGCCGCGCT GCGCCTTGAG
GCGATTAGGG TACTGGTTGC GGGTTGA
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| Protein sequence | MAQQYQPGQR WISDSEAELG LGTVLAQDGR LLTVLYPATG ETRQYALRNA PLTRVRFSPG
DVITHFENWK MTVREVDDVD GLLVYHGLNA QNEVVTLPET QLSNFIQFRL ATDRLFAGQI
DQLSWFSLRY NTLEHTSRQL QSSLWGLGGV RAQPIAHQLH IAREVADRIA PRVLLADEVG
LGKTIEAGLV IHRQLLSGRA NRVLILVPEN LQHQWLVEMR RRFNLQVALF DAERFMESDA
GNPFEDTQLA LVALEWLVED EKAQDALFAA GWDLMVVDEA HHLVWHEEKA SREYSLVEQL
AEVIAGVLLL TATPEQLGQD SHFARLRLLD PNRFHDLKAF RAESENYRPV AQAVQELLDK
GKLSAAAQKT IHGFLGAEGD TLLAAVNAGD DEAKARLIRE LLDRHGTGRV LFRNTRAAVQ
GFPERKLHQY PLPCPVEYLE LPVGEHADLY PEVSFQSQSD ASEEERWWRF DPRVEWLIDT
LKMLKRVKVL VICAHAETAM DLEDALRVRS GIPATVFHEG MNILERDRAA AYFADEEFGA
QVLICSEIGS EGRNFQFSHH LVLFDLPSHP DLLEQRIGRL DRIGQKHVIE LHVPFLETSP
QARLFQWYHE ALNAFLNTCP TGNALQHQFG PRLLPLLESG DDDEWQSLID EARSERERLE
SELHTGRDRL LELNSGGAGE GEALVEDILE QDDQFSLPIY METLFDAFGI DSEDHSENAL
ILKPSEKMLD ASFPLGDDEG VTITYDRNQA LSREDMQFIT WEHPMVQGGM DLVLSGSMGN
TAVALIKNKA LKPGTVLLEL IYVSEVVAPR SLQLGRYLPP AALRCLLDAN GNDLSSRVSF
NTLNDQLESV PRASANKFIQ AQRDQLTPRI NAGEEKITPK HAERVAEAQR RLAADTEEEL
ARLTALQAVN PTVRDSELVA LRTQREQGLA MLEKAALRLE AIRVLVAG
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