Gene PSPTO_4068 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4068 
Symbol 
ID1185748 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4574899 
End bp4575966 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content59% 
IMG OID637395415 
Producttranscriptional regulator, AraC family 
Protein accessionNP_793830 
Protein GI28871211 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.103563 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCCTA CTGGTAAACG CAGTTCGGCT CTGGACTACT CGGTCTGGCC GGGATGGCGG 
GTATTGATGC AGGATGCCGG ACTGGCGACG GCGCCCGTCT TGCGCCGCGC GCAATTGCCG
GGTGATTTGT TCACACGACA AAATGTTCGT CTGGACTCGG CACACTTCTT CAAGCTTTGG
GAGGCGATCG AAGCCGAGGC TGCATCCATC AATGCGGACT TGCCGGCGCC TTTGCAAATT
GCCAAGGTCA TGTCTTCGGA CTGGTTTGAT CCAGAACTTT TTGCCGCGCT GTGCAGCGCC
AACATGGCCG ACGCCCTGGA GCGCATTGCC AAATACGTAA GGTTGATCGC GCCCATGGTC
ATTCGGGTCG TGCCGACCAA AGCGCACACC ACCGTCACCA TGGATTTTCT GGACGCCTGC
GAACCGCCCA CTGTGTTTCT GGCATTCAAG CTCGTGTTTT TTGTTCAATT GGCCAGACTG
GCGACACGCA GTCCTGTGCA GCCCTTGCAG GTTAACTGGC CGTCGCCATC GACGCCCGGC
CCGGACTTGC AGGCCTATCA AGCGTACTTC GGCATTCCCG TGACTCACGC GCCACAGGCC
AGCCTGGTAT TTGCAGCGGC GGACGTAGAG CGCCCGTTTC TGACGGAAAA CCACAAGATG
TGGTTGTTCT TCGAGCCCGG TCTGCGACAG CGATTGTCTG ACCTGGACAG GACATCCGGA
ATGGTCGAGC GGGTACGCAG TGCGCTGCTT GAGTCTTTAC CGGCAGGCGC GGTATCGATG
CAGCAGATCA GCCGAAAACT GGGCGTCAGT ACCCGCACTC TGCAGCGCAG GTTGCAGGAT
GAAGGGACGA CGTTTCAGCA GACGCTCGAT ACGCTGCGCG ATTCCCTGGC ACGCCACTAC
CTGCGCAGCA CAGCCATGTC GAGTGCGCAG ATATCGTTTC TTCTGGGCTT CGAGGACGCC
AATTCCTTTG CTCGCGCATT CCAGTCATGG ACAGGCAGTA CGCCGGGCAA GGTGAGGGCT
GAAATGGATA ACTCCCGTCA TCCATCGACC GCGCGTTCAG GCGAATAA
 
Protein sequence
MSPTGKRSSA LDYSVWPGWR VLMQDAGLAT APVLRRAQLP GDLFTRQNVR LDSAHFFKLW 
EAIEAEAASI NADLPAPLQI AKVMSSDWFD PELFAALCSA NMADALERIA KYVRLIAPMV
IRVVPTKAHT TVTMDFLDAC EPPTVFLAFK LVFFVQLARL ATRSPVQPLQ VNWPSPSTPG
PDLQAYQAYF GIPVTHAPQA SLVFAAADVE RPFLTENHKM WLFFEPGLRQ RLSDLDRTSG
MVERVRSALL ESLPAGAVSM QQISRKLGVS TRTLQRRLQD EGTTFQQTLD TLRDSLARHY
LRSTAMSSAQ ISFLLGFEDA NSFARAFQSW TGSTPGKVRA EMDNSRHPST ARSGE