Gene PSPTO_3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3980 
Symbol 
ID1185656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4486035 
End bp4486781 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content58% 
IMG OID637395327 
Producthypothetical protein 
Protein accessionNP_793744 
Protein GI28871125 
COG category[S] Function unknown 
COG ID[COG0217] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01033] DNA-binding regulatory protein, YebC/PmpR family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.465534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGGTC ATTCTAAGTG GGCGAACATC AAGCACCGCA AAGAGCGTCA GGATGCCAAA 
AAAGGCAAGA TTTTCACCAA ATGGATTCGT GAGCTGACCG TTGCTGCGCG TCAGGGCGGT
GGCGATCCGG GTTCCAATCC GCGTCTGCGT CTGGCGCTGG ACAAGGCGCT TGGTGCGAAC
ATGACCCGTG ACACCATTGA TCGCGCCGTG GCGCGTGGCG TGGGTGCATC AGATGGCGAC
GATGTCGAAG AGCTGGGTTA CGAGGGCTAC GGCCCGGGTG GCGTAGCGGT CATGGTCGAA
ACCATGACCG ACAACCGCAA CCGCACCGCG GCGGCGGTTC GCCATGCGTT CACCAAGTGC
GGTGGTAATC TTGGCACCGA CGGCTCTGTT GCCTACCTGT TCGATCGCAA GGGCCAGATT
TCCTTTGCTG CTGGCGTCGA TGAGGATTCC CTGATCGAGG CCGCCATGGA AGCCGATGCC
GACGATGTCG TGACCAACGA CGACGGCTCG ATCGACGTGT TCACATCGTT CTCCGGGTTC
TACGCGGTTC GTAACGCTTT GGAGGCGGCC GGTTTCATGG CTGCAGATGC AGAAATCGTC
ATGTTACCGA CCACCAGTGC TGTGCTCGAT CTGGAAACCG CTGAAAAAGT CCTCAAGCTG
ATCGACATGC TTGAAGACCT GGATGACGTG CAGAACGTGT ATTCAAATGC GGAAATCCCC
GATGAAGTCA TGGAGCAACT GGGCTGA
 
Protein sequence
MAGHSKWANI KHRKERQDAK KGKIFTKWIR ELTVAARQGG GDPGSNPRLR LALDKALGAN 
MTRDTIDRAV ARGVGASDGD DVEELGYEGY GPGGVAVMVE TMTDNRNRTA AAVRHAFTKC
GGNLGTDGSV AYLFDRKGQI SFAAGVDEDS LIEAAMEADA DDVVTNDDGS IDVFTSFSGF
YAVRNALEAA GFMAADAEIV MLPTTSAVLD LETAEKVLKL IDMLEDLDDV QNVYSNAEIP
DEVMEQLG