| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3977 |
|---|
| Symbol | ruvB |
|---|
| ID | 1185653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4483595 |
|---|
| End bp | 4484533 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395324 |
|---|
| Product | Holliday junction DNA helicase RuvB |
|---|
| Protein accession | NP_793741 |
|---|
| Protein GI | 28871122 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2255] Holliday junction resolvasome, helicase subunit |
|---|
| TIGRFAM ID | [TIGR00635] Holliday junction DNA helicase, RuvB subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0347873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTGT TCATCCAGGC TGCCCGAGGC CGCAGCGAGG CGCTGGACCA CACGCTGATC
TTCGGCCCGC CCGGTCTGGG CAAGACGACC CTGGCCAATA TCATCGCCCA GGAAATGGGC
GTGTCGATCA AGAGCACCTC CGGCCCGGTG CTGGAGCGGC CCGGTGATCT GGCGGCAATC
CTGACCAACC TTGAACCGAA CGACGTGCTG TTTATCGACG AGATTCATCG GTTATCACCG
ATTGTCGAGG AAGTGCTGTA TCCGGCGATG GAGGACTTCC AGCTCGACAT CATGATTGGC
GAAGGCCCTG CAGCACGCTC GATCAAGCTT GATCTACCAC CGTTTACGCT GGTTGGCGCA
ACCACCCGCG CGGGCATGCT GACCAACCCG CTGCGCGACC GCTTCGGGAT TGTGCAGCGC
CTGGAGTTCT ACAATATTGC CGATCTTTCG ACGATCGTGG CTCGTTCGGC AGGCATTTTG
GGGCTGGTCA TCGAGCCCGC AGGTGCGTTC GAGATCGCCA GACGCGCCCG TGGTACGCCG
CGTATAGCCA ACCGTTTGTT GCGCCGCGTG CGGGACTTCG CCCAGGTGCG TGGCAATGGT
CAGATCACCC GGCAGACAGC CGACAAGGCG CTTAACCTGC TGGATGTCGA CGAGCACGGC
TTTGATCATC AGGACAGGCG TCTACTGCTG ACCATGATCG AGAAGTTTGA CGGCGGGCCT
GTCGGTGTCG ACAGCCTCGC GGCCGCGATC AGTGAAGAGC GTCACACAAT TGAAGACGTA
CTGGAGCCCT ATTTGATCCA GCAAGGCTAT ATCATGCGCA CACCTCGCGG GCGCGTGGTC
ACCCGTCATG CGTATCTGCA TTTCGGGCTG AACATTCCGA CGAGGATGGG CGAGATGCCG
GTCGCAGGTG AATTTGTCGA CGATGCCGCG GATTTATAG
|
|---|
| Protein sequence | MELFIQAARG RSEALDHTLI FGPPGLGKTT LANIIAQEMG VSIKSTSGPV LERPGDLAAI
LTNLEPNDVL FIDEIHRLSP IVEEVLYPAM EDFQLDIMIG EGPAARSIKL DLPPFTLVGA
TTRAGMLTNP LRDRFGIVQR LEFYNIADLS TIVARSAGIL GLVIEPAGAF EIARRARGTP
RIANRLLRRV RDFAQVRGNG QITRQTADKA LNLLDVDEHG FDHQDRRLLL TMIEKFDGGP
VGVDSLAAAI SEERHTIEDV LEPYLIQQGY IMRTPRGRVV TRHAYLHFGL NIPTRMGEMP
VAGEFVDDAA DL
|
|---|
| |