| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3972 |
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| Symbol | tolB |
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| ID | 1185648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4479461 |
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| End bp | 4480762 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637395319 |
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| Product | tolB protein |
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| Protein accession | NP_793736 |
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| Protein GI | 28871117 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0956227 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCAACC TTTTTCGAGG ACTGCTCGTC GTTCTCTGTT TCGCCTCCGC AATGGTGGCG
GCAGAAGAAA AGAACATTCT GGTCACCAGC GGCAGTGACC GCGCGGCTCC AATTGCTGTT
GTGCCATTCG GTTGGCAGGG CGGTAACGTG CTGCCGGAAG ACATGGCAGA GATAATCAGC
AACGACCTGC GCAACTCCGG TTACTACGCG CCGATTCCAA AGCAGAACAT GATCAGCTTG
CCGACTCAGG CCAGCGAAGT CATTTTCCGT GACTGGAAAG CGCTGGGTGC ACAGTACGTC
ATGGTCGGCA ACATCACGCC TGCTGGCGGA CGTCTGCAGA TTCAGTACGC GTTGTTCAAC
GTGGCCACTG AGCAGCAGGT CCTGACCGGT AACGTGTCCG GCACCAACGA TCAACTGCGG
GACATGGCGC ATTACATTGC CGACCAGTCG TTCGAGAAGC TCACCGGTAT CAAAGGTGCA
TTCTCTACTC GCATGCTGTA CGTGACTGCC GAGCGTTTTT CGGAGAACAA CACGCGTTAC
ACGCTGCAGC GTTCGGATTA CGACGGTGCT CGTGCGGTAA CCCTGTTGCA ATCCCGTGAG
CCGATTCTGT CGCCGCGTTT CGCGCCAGAT GGCAAACGTA TCGCCTACGT GTCGTTTGAG
CAGAAGCGTC CGCGCATCTT TGTTCAGCAT ATCGATACCG GTCGTCGCGA GCAGATCACC
AACTTCGAAG GCCTTAACGG TGCACCTGCG TGGTCGCCGG ATGGCAGCAA GCTGGCGTTC
GTACTGTCCA AGGACGGTAA CCCGGAAATC TACGTCATCA ATCTGGCTTC GCGTCAGTTG
AGCCGCGTAA CCAATGATTC TTCGATTGAT ACTGAACCTT TCTTCGGCAA GGACGGGTCT
ACGCTATACT TCACGTCGGA CCGTGGCGGG AAGCCACAGA TCTACAAGAC AAACATTAAT
GGCGGCGGTG CCGAACGTGT AACGTTCGTG GGTAACTACA ACGCCAACCC GAAATTGTCA
GCCGATGAAA AGACGCTGGT AATGATTCAC CGGCAGGACG GCTTCACTAA TTTCAAGGTG
GCAGTGCAGG ATTTGGCCCG CGGTAGCGTA AAAATCCTCA CAGATAGCAA CCTTGATGAG
TCGCCTACTG TTGCGCCCAA CGGCACCATG GTAATCTACG CCACCCGCCA GCAGGGCCGG
GGAGTCTTGA TGCTCGTGTC CATCAATGGA CGCGTAAGGC TCCCGCTTCC TACCGCTCAA
GGCGAAGTCA GAGAACCTTC CTGGTCCCCT TACCTGAACT GA
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| Protein sequence | MINLFRGLLV VLCFASAMVA AEEKNILVTS GSDRAAPIAV VPFGWQGGNV LPEDMAEIIS
NDLRNSGYYA PIPKQNMISL PTQASEVIFR DWKALGAQYV MVGNITPAGG RLQIQYALFN
VATEQQVLTG NVSGTNDQLR DMAHYIADQS FEKLTGIKGA FSTRMLYVTA ERFSENNTRY
TLQRSDYDGA RAVTLLQSRE PILSPRFAPD GKRIAYVSFE QKRPRIFVQH IDTGRREQIT
NFEGLNGAPA WSPDGSKLAF VLSKDGNPEI YVINLASRQL SRVTNDSSID TEPFFGKDGS
TLYFTSDRGG KPQIYKTNIN GGGAERVTFV GNYNANPKLS ADEKTLVMIH RQDGFTNFKV
AVQDLARGSV KILTDSNLDE SPTVAPNGTM VIYATRQQGR GVLMLVSING RVRLPLPTAQ
GEVREPSWSP YLN
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