Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3958 |
Symbol | |
ID | 1185633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4465247 |
End bp | 4466680 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395306 |
Product | hypothetical protein |
Protein accession | NP_793724 |
Protein GI | 28871105 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTTT TGCGTCCTAC ACTGCTCACC CTCGCCTGCC TGTTCGCCAC ACACGGCATC GCTGACGATC TTCCGTCACT GGGCGACTCC AGCTCATCGA TTGTTTCCCC GGAGCAGGAA CACCGCCTGG GCCGTGCATG GCTGGGTTTA CTGCGTGGTC AGGTCGGGCA ACTGTCGGAC CCGCAACTCA AGGACTACGT CGAGACATCG GTCTATCGTC TGGCCGAAAC CAGCCAGGTT CAGGACCGGC GACTTGAATT TATCCTCATC AATAGCCCGC AGCTCAACGC CTTCGCAGCA CCTGGCGGGA TCATCGGCGT CAACGGCGGC CTGTTTCTCA ACGCTCAGAC CGAGGGGGAA TACGCATCGG TTCTGGCTCA CGAACTGGCT CACTTGTCCC AGCGCCACTT CGCCAGAGGC ATAGAAGCCC AGCAGCGCAT GCAGGTGCCC GTAATGGCGG CGATGCTGGC GGGTATTGTC ATGGCGGCTG CGGGTGCCGG TGATGCCGGT ATCGCGACCA TCGCCGGCTC ACAGGCGGCT GCGATTCAGG AGCAGCGCCG GTTCTCGCGT CAGAACGAGC AGGAAGCTGA CCGCATCGGC ATTCTCAACC TGGAAAAAGC CGGCTATGAC CCGCGCAATA TGCCGACCAT GTTCGAGCGT CTCATGCGCC AGTACCGATT CGACGCCAGG CCTCCGGAGT TTCTGTTGAC TCACCCGGTC AGCGAATCGC GTATCGCCGA CACGCGCAAC CGCGCCGAGC AGGCCAAACC GGGCGGCAAG GAAGACAGCG TGCTGTACCA ACTGATGCGC GCGCGGGTGG CGCTTATCTA TGAAGAAACG CCAGGCATTG CCGCCAAGCG CTTCCGTGCC CAATTGGTTG AAAATCCGAA ATCCGAGCCC GCGCGCTACG GTCTGGCCAT CGCGCAGATC AAGGGTGGAC AGCTCAATGA AGCACGGGAA AGCCTAAAGC CTCTGCTGGA AAAATCGCCG AACGACATCA CTTACAACCT GACGCAAATC GACCTGGACA TCACCAACAA CCGGCTGGCG GATGCACAGC AACGGGTCGA TCGCATGTTG ACGCTGTACC CGACCAGTTA CCCGCTCAAC GATGTGCGTA TTGATGTGCT GCTCAAGCAG AACCGTACCG CCGAAGCCGA AAAAAGCCTT GAAGCGTTGC TCAAGACCCG TCCCGATGAT CCGGACATCT GGTACGTGGT GGCAGAAACC CGTGGCCTGA ACGGCAACAC GGTCGGCCTG CATCAGGCCC GTGCCGAGTA CTTCGCGCTG GTCGGCGACT TCCGTCAGGC GATCCAGCAA CTGGACTTCG CCAAACGCCG GGCCGCCAAC AACTTCCAGC TGGCCTCGCG AATCGATGCC CGGCAAAAGG ATTTGATCGA GCAGGAACGC ATGGTCAAGG ACATGATGAA CTGA
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Protein sequence | MNFLRPTLLT LACLFATHGI ADDLPSLGDS SSSIVSPEQE HRLGRAWLGL LRGQVGQLSD PQLKDYVETS VYRLAETSQV QDRRLEFILI NSPQLNAFAA PGGIIGVNGG LFLNAQTEGE YASVLAHELA HLSQRHFARG IEAQQRMQVP VMAAMLAGIV MAAAGAGDAG IATIAGSQAA AIQEQRRFSR QNEQEADRIG ILNLEKAGYD PRNMPTMFER LMRQYRFDAR PPEFLLTHPV SESRIADTRN RAEQAKPGGK EDSVLYQLMR ARVALIYEET PGIAAKRFRA QLVENPKSEP ARYGLAIAQI KGGQLNEARE SLKPLLEKSP NDITYNLTQI DLDITNNRLA DAQQRVDRML TLYPTSYPLN DVRIDVLLKQ NRTAEAEKSL EALLKTRPDD PDIWYVVAET RGLNGNTVGL HQARAEYFAL VGDFRQAIQQ LDFAKRRAAN NFQLASRIDA RQKDLIEQER MVKDMMN
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