| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3951 |
|---|
| Symbol | |
|---|
| ID | 1185626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4459539 |
|---|
| End bp | 4460297 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637395299 |
|---|
| Product | metallo-beta-lactamase superfamily protein |
|---|
| Protein accession | NP_793717 |
|---|
| Protein GI | 28871098 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00829584 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGTTTCG CAGTTCTCGG CAGCGGCAGC CGTGGCAACG GCACGCTGGT CGCAAGCAAC
GATACGTATG TATTGGTCGA TTGCGGTTTC TCCCTGCGGG AAACCGAGCG GCGTCTGGCT
CGTCTGGGTG TCGCGGCAAG CCAGCTGAGT GCCATTCTGG TGACCCACGA ACATGCCGAT
CATGTGCATG GCGTGGGTTT GCTGTCGCGG CGCTACAATG TGCCGGTCTA CCTCAGTAGC
GGCACCTTGC GCGGAATGCG CAAGCCGGTG GAAGTTGCCG GTTTGCTGGC AGGCGGGGAG
AGCTTGCAGA TCGGCGCACT GGACATCGAC GTGGTGTCTG TTGCGCATGA TGCACTTGAA
CCGACGCAGT TCGTCTTCAG TGACGGCTCG CGCCGCTTCG GCCTGCTGAC CGACCTCGGC
TCTTACTGCT CCAACGTATT ACAGCGTTAT CAAGGCTTGG ATGCCTTGAT GATCGAGGCC
AATCACTGCC GCGACATGCT TGCCCGAGGC CAGTACCCGG TCTTTCTCAA GCAGCGCGTG
GGCTGTGAAA CCGGTCATTT GAACAACCAT CAGGCCGCCA GCCTGGTGAG CGAACTGGGA
TGGCAGGACC TTCAGCACCT GGTGCTGGCG CATCTCAGCA GCAAGAACAA CCTGCCGCAC
CTGGCCCGGC AATGTTTTGT CGACACCCTT GGGTGCGACC CGGACTGGCT GCAACTGGCC
GATCAAGATT CAGGGCTCGA CTGGCGACAT ATCGCCTAG
|
|---|
| Protein sequence | MRFAVLGSGS RGNGTLVASN DTYVLVDCGF SLRETERRLA RLGVAASQLS AILVTHEHAD
HVHGVGLLSR RYNVPVYLSS GTLRGMRKPV EVAGLLAGGE SLQIGALDID VVSVAHDALE
PTQFVFSDGS RRFGLLTDLG SYCSNVLQRY QGLDALMIEA NHCRDMLARG QYPVFLKQRV
GCETGHLNNH QAASLVSELG WQDLQHLVLA HLSSKNNLPH LARQCFVDTL GCDPDWLQLA
DQDSGLDWRH IA
|
|---|
| |