| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3900 |
|---|
| Symbol | |
|---|
| ID | 1185573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4413040 |
|---|
| End bp | 4416513 |
|---|
| Gene Length | 3474 bp |
|---|
| Protein Length | 1157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637395252 |
|---|
| Product | sensory box histidine kinase/response regulator |
|---|
| Protein accession | NP_793671 |
|---|
| Protein GI | 28871052 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTGT CCAGCGGGCT GATTGCGGCC GTTGCCTTGT CCTATATGGC CATCATGTTC
GCGATCGCTT TCTATGGCGA CCGCTACAGC GCATCGCTGC GCCCGACCAT GCGCGCCTGG
GTGTACAGCC TGTCGCTGGC CGTCTATTGC ACCAGTTGGA CGTTTTTCGG CGCGGTGGGT
CAGGCCGCCG AACAGTTGTG GTCGTTCCTG CCGATTTATC TGGGGCCGAT TGTGCTGATG
GTGCTGGCGC CCTGGGTGCT GCAAAAGATG GTGCTGATCA GCAAGCAGGA AAACATCACC
TCCATTGCTG ACTTCATCGC GGCGCGCTAT GGCAAGTCCC AGTCTCTGGC GGTGATGGTG
GCGCTGATCT GCCTGATCGG CATGCTGCCG TATATCGCCC TGCAGTTGAA AGGCATCGTG
CTGGGCGTGA ATATTTTGAT CGGTGCGGTG GCGGACTCCA CCGGCACCCG CGCCCAGGAT
ACGGCGCTGG TGGTGTCGCT GATTCTGGCG CTGTTCACCA TCGTCTTCGG TGCGCGCAAC
CTGGACGTCA CCGAACACCA TCGTGGCATG GTTCTGGCCA TCGCCTTTGA AGCGCTGGTC
AAGTTGTTCG CGTTCATGGC GGTTGGCGTG TTCGTCACGT TCGGTCTGTA TGACGGCTTC
GATGATCTGT TCAATCAGGC CAAACTCGCG CCGCGTCTTG AGGAATACTG GCAAGACACG
ATCAACTGGC CGTCGATGTT CGTGCAGACC GGCGTGGCAA TGATGGCCAT CGTCTGCCTG
CCGCGGCAGT TTCACGTCAC AGTGGTCGAA AACATCGAGC CTCAGGACCT CAATCTGGCG
AAGTGGGTGT TTCCTGCCTA CCTGGCGCTG GCGGCATTGT TCGTGGTGCC GATAGCGCTG
GCCGGGCAAA TGTTGTTGCC TGCCTCCATG CTGCCCGATT CGTTCGTGAT CAGCCTTCCG
CTGGCGCATG CTCACCCGTC ACTGGCGCTG CTGGCCTTTA TTGGTGGAGC TTCGGCGGCA
ACCGGCATGG TGATTGTGGC CTGCGTGGCG CTGTCGACAA TGATTTCCAA CGACATGCTG
CTGCCGTGGC TGCTGCGCCG CAAGAACACC GAACGGCCGT TTGAAGCGTT TCGTTACTGG
ATGCTCTCGG TAAGGCGCAT CAGCATTGTG ATGATCCTGC TGCTGGCCTA TGTCAGTTAC
CGGATGCTGG GCTCGACCGC GAGCCTGGCC ACCATCGGCC AGATCGCCTT TGCCGCGATC
ACTCAACTGG CACCGGCCAT GTTCGGCGCG CTGTACTGGA AGCAGGCCAA TCGTCGTGGC
GTGTTTGCGG GGCTGGCGGC AGGGATATTC ATCTGGTTCT ACACCCTCGT GCTGCCGGTG
GCAGCGCATG GCATGGGCTG GTCGCTGAGC ACTTTTCCGC TGCTGGAATG GCTGCACAGC
AACCCGTTCG ACTTGCCCAT TTCGCCCATG ACGCAAGGCG TGGTGCTGTC GATGGCCGGT
AACTGCACGC TGTTCGCCTG GGTGTCGATG TTGTCGCGCA CCCGCGTTTC CGAGCACTGG
CAGGCGGGTC GCTTCATCGG TCAGGAAACC CAGGGCCGTG ACTACAGCCG CCCGCTACTG
TCGGTGCAAA TCGAAGACCT GCTGAGCCTT TCGGCACGCT TCGTCGGTGA AGACCGGGCA
CGCCAGAGCT TTATTCGCTT CGCCTACCGG CAGGGCAAGG GCTTCAACCC CAGCCTCAAT
GCCGACGGTG AATGGATCGC GCACACCGAA CGCCTGCTGG CGGGCGTACT GGGCACGTCG
TCGACCCGCG CCGTGGTCAA GGCGGCCATC GAAGGCCGTG ACATGCAACT TGAAGACGTG
GTGCGCATCG CCGATGAGGC TTCCGAAGTC CTGCAATTCA ACCGTGCATT GCTGCAAGGC
GCCATCGAGA ACATTACCCA GGGCATAAGT GTGGTCGATC AGTCGTTGCG GCTGGTGGCC
TGGAATCGTC GTTATCTGGA ACTGTTCAAT TACCCCGAAG GCCTGATCAG CGTTGGTCGG
CCGATTGCCG ACATCATTCG CTATAACGCC GAGCGCGGGC TGTGCGGGCC TGGGGAGGCG
GAAGTTCACG TGGCGCGGCG CCTGCACTGG ATGCGCCAGG GCCGTGCTCA TACTTCCGAA
CGCCTGTTCC CCAATGGTCA GGTAATTGAA CTGATCGGCA ACCCGATGCC GGGCGGCGGC
TTTGTCATGA GCTTCACCGA CATTACCGAG TTCCGCGCAG CGGAGCAGGC GCTCAAAGGC
GTCAATGAGA GCCTTGAACA GCGCGTGGCC GCCCGTACCC ACGAGCTGTC GCAGCTCAAT
CAGGCGCTGA CCGAAGCAAA GGGCACTGCC GAAGCGGCCA ATGAATCGAA AACCCGTTTT
CTGGCAGCGG TCAGCCATGA CCTGATGCAG CCGTTGAATG CGGCACGGCT GTTTTCCGCT
GCGCTGTCGC ATCAGCAGGA CGACATTTCC AGTGAAGCGC AGCAACTGGT GCAGCACCTG
GACAGCTCGC TGCGTTCTGC CGAGGACCTG ATCAGCGACC TGCTGGATAT ATCCCGCCTG
GAAAACGGCA AGATCACCCC GGACTGCCAG CCATTTTCGC TCAACGTGTT GTATGACACG
CTGGGTGCCG AGTTCAAGGC GCTGGCTCAG GAGCAGGGTT TGAAATTCCG CGTGCGGGGC
AGCTCGCTGC GCATCGACAG TGACATCAAG CTGCTGCGTC GGATCCTGCA GAACTTCCTT
ACCAACGCCT TCCGCTATGC CAAAGGACCG ATTCTGCTGG GCGTCAGGCG TTGCGGCGAC
AGCCTGAGCC TTGAAGTCTG GGACCGTGGG CCGGGGATTC CCGAAGACAA GCGCAAAGTG
ATATTCGAGG AGTTCAAGCG CCTCGACAGC CACAAGACCC ATGCAGCCAA GGGGCTGGGC
CTGGGGCTGG CGATTGCCGA TGGCTTGTGC CGCATTCTCG AGCACCCGTT GCAGGTGCGC
TCCTGGACCG GCAAGGGCAG CGTGTTCAGC GTGCGGGTGC CGCTGGCCGC CGCGCAGGCA
CCGATGCCGG TACTGCAGAC CGAAGTCAGC CGACCCGCAC TGAACGGTAC GCAAGTGCTG
TGCATCGACA ACGAAGACAG CATCCTGATC GGCATGAACA GCCTGCTGAC TCGCTGGGGC
TGCCAGGTCT GGACCGCCCG CAATCGTCAG GAGTGCGAAG CGCTGCTGAA CAATGGCGTG
CGGCCACAGA TTGCGCTGGT GGATTACCAC CTCGATGAGG GTGAAACCGG CACAGAACTG
ATGGCCTGGC TACGCACCCG TCTGGGTCAA CCGGTGCCGG GCGTGTTGAT CAGCGCCGAC
GGCAGGCCGG AGCTGATTGC TCAGGTGCAT GCCGCCGGGC TCGATTACCT GCCCAAGCCG
GTCAAGCCAG CAGCGCTGCG AGCACTGTTG AGCCGGCATG TGAATCTGGA CTGA
|
|---|
| Protein sequence | MSLSSGLIAA VALSYMAIMF AIAFYGDRYS ASLRPTMRAW VYSLSLAVYC TSWTFFGAVG
QAAEQLWSFL PIYLGPIVLM VLAPWVLQKM VLISKQENIT SIADFIAARY GKSQSLAVMV
ALICLIGMLP YIALQLKGIV LGVNILIGAV ADSTGTRAQD TALVVSLILA LFTIVFGARN
LDVTEHHRGM VLAIAFEALV KLFAFMAVGV FVTFGLYDGF DDLFNQAKLA PRLEEYWQDT
INWPSMFVQT GVAMMAIVCL PRQFHVTVVE NIEPQDLNLA KWVFPAYLAL AALFVVPIAL
AGQMLLPASM LPDSFVISLP LAHAHPSLAL LAFIGGASAA TGMVIVACVA LSTMISNDML
LPWLLRRKNT ERPFEAFRYW MLSVRRISIV MILLLAYVSY RMLGSTASLA TIGQIAFAAI
TQLAPAMFGA LYWKQANRRG VFAGLAAGIF IWFYTLVLPV AAHGMGWSLS TFPLLEWLHS
NPFDLPISPM TQGVVLSMAG NCTLFAWVSM LSRTRVSEHW QAGRFIGQET QGRDYSRPLL
SVQIEDLLSL SARFVGEDRA RQSFIRFAYR QGKGFNPSLN ADGEWIAHTE RLLAGVLGTS
STRAVVKAAI EGRDMQLEDV VRIADEASEV LQFNRALLQG AIENITQGIS VVDQSLRLVA
WNRRYLELFN YPEGLISVGR PIADIIRYNA ERGLCGPGEA EVHVARRLHW MRQGRAHTSE
RLFPNGQVIE LIGNPMPGGG FVMSFTDITE FRAAEQALKG VNESLEQRVA ARTHELSQLN
QALTEAKGTA EAANESKTRF LAAVSHDLMQ PLNAARLFSA ALSHQQDDIS SEAQQLVQHL
DSSLRSAEDL ISDLLDISRL ENGKITPDCQ PFSLNVLYDT LGAEFKALAQ EQGLKFRVRG
SSLRIDSDIK LLRRILQNFL TNAFRYAKGP ILLGVRRCGD SLSLEVWDRG PGIPEDKRKV
IFEEFKRLDS HKTHAAKGLG LGLAIADGLC RILEHPLQVR SWTGKGSVFS VRVPLAAAQA
PMPVLQTEVS RPALNGTQVL CIDNEDSILI GMNSLLTRWG CQVWTARNRQ ECEALLNNGV
RPQIALVDYH LDEGETGTEL MAWLRTRLGQ PVPGVLISAD GRPELIAQVH AAGLDYLPKP
VKPAALRALL SRHVNLD
|
|---|
| |