Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3899 |
Symbol | |
ID | 1185572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4410922 |
End bp | 4412796 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395251 |
Product | acyltransferase family protein |
Protein accession | NP_793670 |
Protein GI | 28871051 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0204] 1-acyl-sn-glycerol-3-phosphate acyltransferase |
TIGRFAM ID | [TIGR00530] 1-acyl-sn-glycerol-3-phosphate acyltransferases |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.516687 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCAAC AGTCACAATT CAGCTTGCTC GGGAAACGTC GTTTCCTGCC TTTTTTTATC ACGCAGTCCC TCGGGGCGTT CAATGACAAT ATCTTCAAGC AGTCGTTGAT TCTTGCGGTC CTTTACAAGC TGAGCATCGA TGGTGATCGC TCTATCTACG TCAATCTGTG CGCTTTGCTG TTCATTCTGC CGTTCTTTCT GTTCTCGGCG CTGGCCGGGC AGTTCGGCGA GAAGTACCCC AAGGACAAGC TGATCCGCAT TATCAAGTTC GCAGAGATCG TCGTCATGGC GGTCGGGGCT GCGGGCTTTC TGTTCAATCA TCTGGAGTTG ATGCTGGCCG CACTGTTCGC CATGGGCACG CACTCTGCGC TGTTCGGACC GGTCAAATAT TCGATTCTGC CGCAGCACCT GCGCGAGACT GAGCTGGTCG GCGGCAACGC GCTGGTCGAG ATGGGGACTT TTCTGGCGAT CCTTGCCGGC ACCATCAGTG CCGGGGTGAT GATGTCCTCC TCTCACTACG GCTGGATAGT GTCGGCGGCG ATTGTGCTGG TCGCGTGTCT TGGTTTTGTG GCCAGTTTTG GTATTCCGAA CGCCGCTGCC GCTTCGCCGG AAATGAAGCT CAACTGGAAC ATTTTCACCC AGTCCTGGGC AACCCTGCGC ATGGGGCTGG GGCAAACGCC CGCCGTTTCG CGTTCGATTG TCGGCAACTC CTGGTTCTGG TTTGTCGGTG CGATCTACCT CACGCAGATT CCGGCTTACG CCAAAGAGTG GATGTACGGT GACGAAACAG TCGTCACGCT GATCCTGACG GTGTTCTCTG TCGGTATCGC ACTGGGCTCG CTGCTGTGCG AGCGGTTGTC CGGGCATAAA GTCGAGATCG GGCTGGTGCC GTTCGGCTCG ATGGGCCTGA CAATCTTTGG TCTGTTGCTG TGGTGGCATT CCGGTGGTTT CCCGCAGAAC GTGCAGGCCA ATGACTGGCT GGCGATCCTT TCCTACGGGC AGGGCTGGCT GGTGCTGTTC GACATTCTGG GCATCGGCGT GTTCGGTGGC TTCTACATCG TGCCGCTGTA TGCGCTGATC CAGTCCCGTA CGCCGGTGAA AGAGCGCTCA CGGGTCATCG CCGCCAACAA CATCCTCAAC GCGCTGTTCA TGGTGGTTTC GGCGATTGTT TCGATCCTGT TGCTGAGCTT CGCCAAACTG TCGATTCCGC AGCTGTTCCT GGCGATATCG CTGATGAACA TCGCGGTGAA TATCTACATC TTCAAGATCG TCCCCGAGTT CACCATGCGC TTCATGATCT GGCTGCTGGG CCATTCCATG TACCGCGTCG AGCACCGGGA TTTGAACCGG ATACCTGACG AGGGCGCGGC ATTGCTGGTC TGCAACCATG TGTCCTTTGT CGATGCATTG CTGATTGCCG GTGCGGTGCG GCGACCGATC CGCTTTGTGA TGTATTACAA GATCTACCAG CTGCCGGTGC TCAACTTCAT CTTCCGCACC GCCGGGACCA TCCCGATTGC CGGGCGCAAC GAAGACATGC AAATCTACGA ACAGTCGTTC AAACGTATCG CCCAGTACCT CGCGGAAGGC GAGCTGGTGT GCATCTTCCC TGAAGGCAAA CTGACCACCG ACGGCGAGAT CAACGGCTTC AAGAACGGCA TGAGCCGCAT CATCGAGCAA ACCCCGGTGC CGGTCATTCC GCTGGCACTG CAAGGCCTGT GGGGCAGCTT CTTCAGCCGT GACCCGAGCA AGACCCTGTT CCGCCGCCTG TGGTCACGCG TGGTGCTGGT GGCGGGTGCG CCCATACCCG CCGATGTGGC GACGCCGGTG GATGTGCGCG AAGAGGTGAA AGCGCTGAGA GGGAAAGTGC AGTAA
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Protein sequence | MSQQSQFSLL GKRRFLPFFI TQSLGAFNDN IFKQSLILAV LYKLSIDGDR SIYVNLCALL FILPFFLFSA LAGQFGEKYP KDKLIRIIKF AEIVVMAVGA AGFLFNHLEL MLAALFAMGT HSALFGPVKY SILPQHLRET ELVGGNALVE MGTFLAILAG TISAGVMMSS SHYGWIVSAA IVLVACLGFV ASFGIPNAAA ASPEMKLNWN IFTQSWATLR MGLGQTPAVS RSIVGNSWFW FVGAIYLTQI PAYAKEWMYG DETVVTLILT VFSVGIALGS LLCERLSGHK VEIGLVPFGS MGLTIFGLLL WWHSGGFPQN VQANDWLAIL SYGQGWLVLF DILGIGVFGG FYIVPLYALI QSRTPVKERS RVIAANNILN ALFMVVSAIV SILLLSFAKL SIPQLFLAIS LMNIAVNIYI FKIVPEFTMR FMIWLLGHSM YRVEHRDLNR IPDEGAALLV CNHVSFVDAL LIAGAVRRPI RFVMYYKIYQ LPVLNFIFRT AGTIPIAGRN EDMQIYEQSF KRIAQYLAEG ELVCIFPEGK LTTDGEINGF KNGMSRIIEQ TPVPVIPLAL QGLWGSFFSR DPSKTLFRRL WSRVVLVAGA PIPADVATPV DVREEVKALR GKVQ
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