Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3885 |
Symbol | prc |
ID | 1185556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4396500 |
End bp | 4398581 |
Gene Length | 2082 bp |
Protein Length | 693 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395235 |
Product | tail-specific protease |
Protein accession | NP_793656 |
Protein GI | 28871037 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.455139 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCAAC TACTCCCCAG CACTGCCCTC GCACTGTTTG TCGGCCTTGG CGTATTGCCG ATGTCAGCCA GTACTTTTGC CGCCAACAGC TGGGATAACC TTCAGCCGGA TCGCGACGAA GTGATTGCCA GCCTCAACGT CGTTGAGCTG CTCAAGCGAC ATCACTACAG CAAGCCGCCC CTGGACGACA AGCGTTCGGC CATTATTTAT CAAAGCTACA TCAAGCAACT GGACCCCTCG CGCAGCTATT TCATGGCCAG CGATATTGCC GAATTCGACA AGTGGCAGTT CCAGTTCGAT GACTTTCTGA AAAGTGGCGA CCTGAACCCG GGCTTCACCA TCTACAAGCG CTACCTGGAC CGCATCAAGG CGCGTCTGGA CTTCGCGCTG GCTGAATTGA GCAAAGGCGT CGACAAGCTC GACTTCAATA CCAAGGAAAC CCTGCTGGTG GACCGCAAGG ACGCCGCATG GCCCAAGGAC ACGGCCGAGC TCGACGAACT GTGGCGCAAG CGCATCAAGG ATGAAGTCCT GCGCCTGAAG ATCGCCGGCA AAGACCCGGC GAAGATTCAG GAAACCCTGA CCAAACGCTA CAAGAATCAG CAGGCGCGCC TGAACCAGAC CCGCGCCGAA GATATCTTTC AGGCTTACAT CAATACCTTT GCCATGTCTT ACGACCCGCA TACCAACTAC CTGTCACCGG ACAGCGCGGA GAACTTCGAC ATCAACATGA GCCTGTCGCT GGAAGGCATC GGTGCTGTGT TGCAGAGCGA TAACGACAAC GTGAAAATCG TGCGTCTGGT GCCGGCAGGT CCGGCGGCCA AGACCAAGCA GGTCGCCCCG GCCGACAAGA TCGTCGCCGT TGCCCAGGGC GACAAGGAAA TGGTCGATGT GATCGGCTGG CGCCTGGACG AAGTGGTCAA GTTGATCCGC GGTCCGAAAG GCTCCGTGGT GCGCCTGGAG ATCATCCCGG CCAGCAATGC GCCGAATGAC CAGACCAGTA AAATCGTGGC CATCACCCGT GAAGCGGTGA AACTTGAAGA GCAGGCGGCC AAGAAGTCGA TTCTGCACCT CAAACAGGAT GGCAAGGACT ACAAGCTCGG CGTCATCGAC ATTCCCGCGT TCTATCTGGA CTTCAAGGCC TACCGTGCAG GCGATCCGGA ATACAAGAGC ACCACCCGCG ACGTGAAGAA ACTGCTGACC GAACTGCAGG CCGAGAAGGT CGACGGCGTG GTCCTGGATC TGCGCAACAA CGGTGGCGGC TCGTTGCAGG AAGCGACCGA GCTGACCAGC CTGTTCATCG ACAAAGGTCC GACCGTGCTG GTGCGTAACG CAGACGGCAA GGTCGATGTG CTGGAAGATG AAGCCAAGGG CGCGTTCTAC AAAGGCCCGA TGGCATTGCT GGTCAACCGC TTGTCGGCGT CGGCGTCGGA GATTTTCGCG GGTGCCATGC AGGACTACCA CCGCGCGCTG GTGATCGGTG GCCAGACCTT CGGCAAAGGC ACCGTACAGA CCATTCAGCC GCTTAATCAC GGCGAACTGA AGCTGACCCT GGCCAAGTTC TACCGCGTTT CCGGCCAGAG CACCCAGCAT CAGGGCGTGG TACCGGACAT CACTTACCCA TCGCTGATCG ACACCAAGGA AATTGGTGAG AGTGCGCTGC CCGAGGCCAT GCCATGGGAC AGCATCAAAC CGGCCATCAA GCCGGCGATC GATCCGTTCA AGCCGTTCCT GGCGCAGTTG CAGTCACGTC ATGAAGCACG CTCGTCGAAA GACGCCGAGT TCGTGTTCAT CGAAGATCGC CTTGCACTGG CCAAGAAGCT GATGAACGAG AAGACCGTCA GCCTCAATGA AGCCGACCGC CGCGCCGAGC ACGCGTCCAT CGAAGGCAAG CAACTGGCGC TGGAAAACAC TCGCCGCAAG GCCAAGGGTG AAGAGCCGCT CAAAGAGCTG AAAAAGGAAG ACGAAGACGC GCTGCCTGTC GAAGACGAGA AGACCAAGCC CGAGGACGAT GCCTACCTGG CAGAGACCGG GCGTATTCTG ATCGACTACC TGGGGTTGAG CGCTGCGGTC GCGAAAAAAT AA
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Protein sequence | MKQLLPSTAL ALFVGLGVLP MSASTFAANS WDNLQPDRDE VIASLNVVEL LKRHHYSKPP LDDKRSAIIY QSYIKQLDPS RSYFMASDIA EFDKWQFQFD DFLKSGDLNP GFTIYKRYLD RIKARLDFAL AELSKGVDKL DFNTKETLLV DRKDAAWPKD TAELDELWRK RIKDEVLRLK IAGKDPAKIQ ETLTKRYKNQ QARLNQTRAE DIFQAYINTF AMSYDPHTNY LSPDSAENFD INMSLSLEGI GAVLQSDNDN VKIVRLVPAG PAAKTKQVAP ADKIVAVAQG DKEMVDVIGW RLDEVVKLIR GPKGSVVRLE IIPASNAPND QTSKIVAITR EAVKLEEQAA KKSILHLKQD GKDYKLGVID IPAFYLDFKA YRAGDPEYKS TTRDVKKLLT ELQAEKVDGV VLDLRNNGGG SLQEATELTS LFIDKGPTVL VRNADGKVDV LEDEAKGAFY KGPMALLVNR LSASASEIFA GAMQDYHRAL VIGGQTFGKG TVQTIQPLNH GELKLTLAKF YRVSGQSTQH QGVVPDITYP SLIDTKEIGE SALPEAMPWD SIKPAIKPAI DPFKPFLAQL QSRHEARSSK DAEFVFIEDR LALAKKLMNE KTVSLNEADR RAEHASIEGK QLALENTRRK AKGEEPLKEL KKEDEDALPV EDEKTKPEDD AYLAETGRIL IDYLGLSAAV AKK
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