| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3871 |
|---|
| Symbol | htrB |
|---|
| ID | 1185542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4383469 |
|---|
| End bp | 4384401 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395222 |
|---|
| Product | lipid A biosynthesis lauroyl acyltransferase |
|---|
| Protein accession | NP_793643 |
|---|
| Protein GI | 28871024 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1560] Lauroyl/myristoyl acyltransferase |
|---|
| TIGRFAM ID | [TIGR02207] lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGCC CGCGCTTTAA AGCCAGTTTC CTTCACCCTC GTTTCTGGCC ATTGTGGCTG
GGGCTGGGGC TTTTGTGGCT GATCGTCCAG TTGCCGTTTC GCGTTCTGCT GATCATCGGC
AGGGCGCTGG GGGCAGTCAT GTATCGCGTG GCCACTGATC GAAAAAATAT TGCGTCGCGC
AATCTGGAGC TGTGTTTCCC TCATTTGTCT GCGGCCGAGC GCAAGCGCTT GCTGAAGGAA
AACTTCGCTT CTACAGGCAT CGCCTTCTTT GAAATGGCCA TGAGCTGGTG GTGGTCCAGA
TCGCGTCTGG CGAAGCTCGC CCATGTCGAA GGGCTCGAGC ACCTGCAACA TGCCCAGCAG
AAGGGCGAGG GCGTGATTCT CATGGCGCTG CACTTCACCA CGCTTGAGAT CGGCGCAGCG
CTGCTGGGCC AGCAGCACAC CATCGACGGC ATGTACCGCG AACACAAGAG CCCGCTGTTC
GACTTCATCC AGCGTCGCGG GCGCGAACGG CACAACCTTG ACTCACTGGC TGTCGAGCGC
GATGACGTAC GTGGCATGCT CAAATTGCTG CGTGCCGGGC GTGCAATCTG GTACGCGCCG
GATCAGGACT ACGGCGCCAA ACAGAGCGTC TTCGTGCCGC TGTTCGGCAT TCAGGCGGCA
ACCGTGACCG CGACCAGCAA GTTTGCCCGA CTGGGGCGCG CCCAAGTGGT GCCGTTCACT
CAGCAGCGCC TGGCCGACGG CAGCGGCTAT CGGTTGGTGA TTCATCCGCC GCTGAAAGAT
TTTCCCGGTG AAAGCGACGA AGCCGATTGC CTGCGCATCA ATCAATGGGT AGAAAGGGCT
ATCACAGAAT GCCCGGAACA GTATCTTTGG GCCCATCGAC GTTTCAAAAG TCGCCCGGCC
GGTGAACCGA AGCTATACAA GAAACATAAA TAA
|
|---|
| Protein sequence | MDRPRFKASF LHPRFWPLWL GLGLLWLIVQ LPFRVLLIIG RALGAVMYRV ATDRKNIASR
NLELCFPHLS AAERKRLLKE NFASTGIAFF EMAMSWWWSR SRLAKLAHVE GLEHLQHAQQ
KGEGVILMAL HFTTLEIGAA LLGQQHTIDG MYREHKSPLF DFIQRRGRER HNLDSLAVER
DDVRGMLKLL RAGRAIWYAP DQDYGAKQSV FVPLFGIQAA TVTATSKFAR LGRAQVVPFT
QQRLADGSGY RLVIHPPLKD FPGESDEADC LRINQWVERA ITECPEQYLW AHRRFKSRPA
GEPKLYKKHK
|
|---|
| |