Gene PSPTO_3863 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3863 
SymbolpsyR 
ID1185534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4376977 
End bp4377720 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content52% 
IMG OID637395214 
Producttranscriptional regulator PsyR 
Protein accessionNP_793635 
Protein GI28871016 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.831721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGGTTC ATACCGTGAA AAACCAACTT GACTGTCCAC CGTTAAAGAT CAACGGCGCC 
CCTGCTCCGC TTCGCCAACT CATCGAAGAC TTTGAAAACG ACCTGCATCA TATTGGCGAC
TTTACGTATG CCTATTTCAC CACGCCCAAG GCCCGTAAAG CCAAGCCCAT CATCCTTTCC
AATTATCCCG ACTCATGGTT GAAATCTTAT ATTGCGTCCA ACTACCACCT GATCGACCCG
ATCATCAAAC ATGCCTGGCA CAGCATTACA CCCTTCTTCT GGAGGGAAGC CAGAAACGCT
GTTCAGTGCG TCGAAACCGA TGATTTCCTG AAACGATCGG CTAAATATCA ATTGTCCTCG
GGGGCCACTT TCACCCTGCA CGATGCCAGT GGGCTTTTTG CCGCTCTGAG CCTGTGCAAT
GCCAAGCAGC AGCATGACTT CGACCAGCGC ATCCGTGACA AGGCCGCTGA TATTCAGATG
AGCCTCATTC GCTTCCACGA TCGCCTGATC AAGACCAGAG CGCCCCATGA ACTCTTTCCG
CCCACCGCGA ATTGCAAGTT GTCCAGCCGC GAAACAGACA TCCTGAAATG GGTGGCAATG
GGCAAGGCGT ATAGCGAAAT CGCCGAGATC TTTTCCATAT CGGAACGCAC GGTAAAATTT
CACATGTCCA ACGTCTCAAG CAAACTCGAG GTCCGCACTG CAAAGCAGGC CGTTTACAAG
GCCATCAAGA TGGGCATGGT CTGA
 
Protein sequence
MEVHTVKNQL DCPPLKINGA PAPLRQLIED FENDLHHIGD FTYAYFTTPK ARKAKPIILS 
NYPDSWLKSY IASNYHLIDP IIKHAWHSIT PFFWREARNA VQCVETDDFL KRSAKYQLSS
GATFTLHDAS GLFAALSLCN AKQQHDFDQR IRDKAADIQM SLIRFHDRLI KTRAPHELFP
PTANCKLSSR ETDILKWVAM GKAYSEIAEI FSISERTVKF HMSNVSSKLE VRTAKQAVYK
AIKMGMV