| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3849 |
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| Symbol | |
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| ID | 1185520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4357545 |
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| End bp | 4359572 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637395200 |
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| Product | Rhs element Vgr protein |
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| Protein accession | NP_793621 |
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| Protein GI | 28871002 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGCGC CAGAACATCG TTTCAGTCTG ACTATCGAAG ACTCGCCCTA CGCATTTCAA
GTGCTTGCCT TCGACGGTAC GGAAGGCATC AGCAGGCCCT ATGCGTTCAC GATAGATCTG
GTCAGCGAAT GCGCTGACCC AGACCTCGAG CAGCTTTTGC ACAAACAGGC ATTCTTGGCA
TTCGACGGCA TGGAATCAGG CATCCACGGG CAGATCTATC AGGTCAGTCA ACGTGACTCG
GGCAGACGGC TGACGCATTA CAGCGTCACG CTGGCTCCCC ATTTTAGCTA TCTGGCACAC
CGCACCAATC AGCGCATTTT TCAGTCCTTG ACCGTTCCGC AAATCATCAG CCTGGTGCTC
AAGGACCACG GTATTTTCGA AAGCGCGCAT CAGTTTCAAC TCAATACGTG CTACTTGCCT
CGTGAGTATT GCGTGCAGTA CCAGGAAACC GATCTGCATT TCATACAGCG CCTGTGCGAA
GAGGAAGGCA TGCACTTCCA TTTCCAGCAC AGCCGCAAAA GCCATGTTCT GGTATTCGGC
GATAACCAGA GCATATTCCG TAAGCTGGCA CGGGCCACCG CCTACCATCA AGACAGCGGG
ATGGCTGCTG ACGAGCCCGT TGTCCGCAGC TTCGGCACGC GCCTGGAAAC CCGCACCAGT
CATACCGCCA GGCGCGATTA CAACTTCGAG AACGCCGGAT GGCAGCCGCA AGCCGACTAC
CATCCTGACA AGGACAAGGT CCAACCAGAC CTTGAGGACT ACACCTATCC GGGTAGTTTT
CACACCCGCG ACCGAGGCCA ACTGTTGAGC CAGCACGCTC TGGAGCGCCA CCGTTGTGAC
TATCAAAAGG CAGAGGGGAA AAGCGACCAG CCCGCGCTGG TCAGCGGGCA TTTTCTGCAG
CTCAGCGATC ATCCTCGAAA AGAATGGAAC ACGCTCTGGC TACTGACACG CGTGCATCAT
CAGGGCAAAC AACCGCAGGT TCTGGAAGAA GCGCTCGTTG GCAATATCCT TGATAGAGAG
AACTTCACTC AGGGCTACAG GAACAGTTTC GTTGCAACGC CCTGGAACGT ATTTTTCAGG
CCCGCTCTCA AGCACCGCAA GCCTCGCATC TTCGGCAGTC AGACAGCCCG TGTCACCGGC
CCTGAATCGG AGCAGGTTCA CTGCGATAGC CATGGCCGAA TCAAGGTTCA GTTCCACTGG
GACCGTGAGA GCACGTTTAA CGCACGAAGC AGCACCTGGC TGAGAGTTGC GTCCCAATGG
GCCGGGAACA TGCACGGCAG CGTCACCATT CCGCGCGTAG GCATGGAAGT GCTGGTGACC
TTTATCGATG GAGACCCGGA TCAGCCGGTG GTCAGCGGTT GCCTGCCCAA CAGCCTGAAT
CCAGCACCCT ACGAACTCCC GGCCCATCAA ACCCGCAGTG TCTTTCGCAG CCGCAGCACG
CCTGACGGCG GCGGTTTCAA CGAACTCTAT CTGGAGGACC GTAGCGAGCA AGAGCTTATC
TATGTGCGCG CACAACGTGA CATGGAACAG AAAATCAACC ATGACAGCCG TATCGAAGTG
GGCAATGACC GGCTGGAAAC CGTCAAGGGC AATAGCATCA GCGTTGTAGA AACAGAGGAA
CGGCGCACCG TAGGGGCAGA CCGCAAAGTC CGGGTAAAAG CAGATGATTA TCTGCACGTG
GACAACAACA GTTACTGGCA TGCCGGACAG ATTCTGGTCG CCGAAGCAGG ACAGCAGGTT
CATATCAAGG CTGGCACCAA CCTGATTCTG GATGCAGGTG CGAGCCTTAC CCTCAAGGCA
GGTGGTCAGC ACATCGTCAT AGGCGCTGGC GGTATTTTCA GCAGCAGTCC TATCAATCCG
GGGGGCGTTC CTTTCATCGG GGCACGTTCT GTATCAGGGC TGCCGACGCC TGTAGCGGCG
CTACTGAGCG CCTCTCTTGC CTCACAGAAA CAGGCATTTC AGGATGCAGC AGCAAAAGCG
GCTCCAGTGT GTGCTATTTG CCTGAAGTTG AAGGGAGAAC AACCATGA
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| Protein sequence | MPAPEHRFSL TIEDSPYAFQ VLAFDGTEGI SRPYAFTIDL VSECADPDLE QLLHKQAFLA
FDGMESGIHG QIYQVSQRDS GRRLTHYSVT LAPHFSYLAH RTNQRIFQSL TVPQIISLVL
KDHGIFESAH QFQLNTCYLP REYCVQYQET DLHFIQRLCE EEGMHFHFQH SRKSHVLVFG
DNQSIFRKLA RATAYHQDSG MAADEPVVRS FGTRLETRTS HTARRDYNFE NAGWQPQADY
HPDKDKVQPD LEDYTYPGSF HTRDRGQLLS QHALERHRCD YQKAEGKSDQ PALVSGHFLQ
LSDHPRKEWN TLWLLTRVHH QGKQPQVLEE ALVGNILDRE NFTQGYRNSF VATPWNVFFR
PALKHRKPRI FGSQTARVTG PESEQVHCDS HGRIKVQFHW DRESTFNARS STWLRVASQW
AGNMHGSVTI PRVGMEVLVT FIDGDPDQPV VSGCLPNSLN PAPYELPAHQ TRSVFRSRST
PDGGGFNELY LEDRSEQELI YVRAQRDMEQ KINHDSRIEV GNDRLETVKG NSISVVETEE
RRTVGADRKV RVKADDYLHV DNNSYWHAGQ ILVAEAGQQV HIKAGTNLIL DAGASLTLKA
GGQHIVIGAG GIFSSSPINP GGVPFIGARS VSGLPTPVAA LLSASLASQK QAFQDAAAKA
APVCAICLKL KGEQP
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