| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3841 |
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| Symbol | |
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| ID | 1185512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4347221 |
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| End bp | 4350607 |
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| Gene Length | 3387 bp |
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| Protein Length | 1128 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395192 |
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| Product | ribonuclease, Rne/Rng family protein |
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| Protein accession | NP_793613 |
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| Protein GI | 28870994 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.87898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTGTGCCG AACGCCGTTT CCGGCAGCCC GGAAACCGAC GGTACTACAT GAAAAGAATG
CTGATTAACG CAACTCAACC CGAAGAGTTG CGTGTTGCAC TGGTAGACGG CCAGCGCCTC
TACGACCTGG ACATCGAGTC AGGTGCACGC GAGCAGAAGA AGGCCAACAT CTATAAAGGC
CGGATCACTC GTATCGAACC CAGCCTTGAG GCTGCCTTTG TCGATTTCGG CTCTGAGCGC
CACGGCTTTC TGCCCCTCAA GGAAATCTCC CGCGAGTACT TCAAGAAAGC CCCAGAAGGC
CGCGTCAACA TCAAGGACGT CCTGAGCGAA GGCCAGGAAG TCATCGTTCA GGTCGAGAAA
GAAGAACGTG GCAACAAGGG TGCAGCCCTG ACCACCTTCA TCAGCCTTGC CGGCCGTTAT
CTGGTTCTGA TGCCGAACAA CCCTCGCGCC GGTGGCATCT CGCGCCGTAT CGAAGGCGAA
GAGCGCAACG AACTGCGTGA AGCGCTGAAC GGCCTGATCG CTCCTGCCGA CATGGGCCTG
ATCGTTCGTA CTGCCGGCCT TGGCCGTAGC AGCGAAGAAA TGCAGTGGGA CCTCGATTAC
CTGCTGCAAC TGTGGACCGC TATCAAGGAA GCGTCCCTGG ATCGTTCGGC GCCTTTCCTG
ATCTACCAGG AAAGCAACGT CATCATCCGC GCCATCCGCG ATTACCTGCG CCAGGACATC
GGTGAAGTCC TGATCGACAG CGTCGAAGCC CAGGAAGAAG CCCTGACCTT CATCCGCCAG
GTGATGCCGC AGTACGCCAG CAAGATCAAG CTGTACGAAG ACAGCGTGCC GCTGTTCAAC
CGCTTCCAGA TCGAAAGCCA GATCGAAACC GCCTTCCAGC GCGTTGTCGA ACTGCCTTCC
GGTGGTTCCA TCGTTATCGA TCCGACCGAA GCCCTGGTGT CCATCGACAT CAACTCGGCG
CGCGCCACCA AAGGCAGCGA CATCGAAGAA ACCGCCCTGC AGACCAACCT TGAAGCGGCT
GAGGAAATCG CCCGCCAATT GCGTCTGCGT GACATCGGCG GCCTGATCGT CATCGACTTC
ATCGACATGA CGCCGGCCAA GAACCAGCGC GCCGTGGAAG AAAAAGTCCG CGAAAGCCTC
GAAGCCGACC GCGCCCGCGT TCAGGTCGGT CGCATCTCGC GCTTCGGTCT GCTGGAAATG
TCCCGTCAGC GCCTGCGCCC ATCGCTGGGC GAAAGCAGCG GCATCGTCTG CCCGCGCTGC
AACGGCACCG GCATCATCCG TGACGTCGAA TCGCTGTCGC TGGCCATCCT GCGCCTGATC
GAAGAAGAAG CCCTGAAAGA CCGTACCGCA GAAGTACGTG CTCAGGTGCC GATCCCGGTG
GCTGCGTTCC TGCTCAACGA GAAGCGCAAC TCGATCACCA AGATCGAACT GCGCACCCGT
GCGCGCATCA TCATTCTGCC GAACGACCAG CTCGAAACGC CGCACTTCGA GGTTCAGCGT
CTGCGTGACG ACAGCCCGGA AGCGCACAAC AGCCAGACCA GCTACGAGAT TGCCGCTGCC
GCTGCCGAAG TGGAAGAAAT TGCCCCACTG GCCGCAGCAA CCCGCACCCT GGTTCGCCAG
GAAGCCGCCG TCAAGACAGC CCCGGCACGT GCCAACGCAC CTGTTCCGGT GGAAGTCGCT
GCGCCTGCTC CAACGCCTGC GCCTGTCGCT CACGAGCCAA GCCTGTTCAA GGGTCTGGTG
AAATCGCTGG TCAGCCTGTT CGCGACCAAG GAAGAGCCTG TTGTTGCACC GGCTGTGGTT
GAAAAACCTG CTGCCGAACA GCGCCCGGCC CGCAATGAAG AGCGTCGCAA CGGTCGTCAA
CAGAGCCGCG GCCGCAACAA TCGTCGCGAC GAAGAGCGCA AGCCTCGTGA AGAGCGCGCG
CCCCGCGAAG AACGTGCAGA ACGCGCACCG CGCGAAGAGC GTGCGCCCCG TGAAGAACGT
GCACCGCGTG AAGAACGCGC CGTTCGCGAG CCTCGTGAAG CCCGCGAAGA GTCAGCCCCG
CGCGAAGAGC GTCCGGCACG TACATCCCGT GAGCGCAAGC CGCGTGAAGC CCGTGAAGAT
CGTCCGGTCC GCGAACTGCG TGAGCCTCTG GACGCAGTCG CCACCGCAGC CCAGGCCGGT
CCTGCCGTGA ACCTGGCTCG TGAGGAGCGC CCTGAACGCG CGCCACGCGA AGAACGCCAA
CCGCGCGCAC CGCGTGAAGA ACGTCAACCA CGCGCCGAAC AGGCTGCGGT TGCCGTGAGC
GAAGAAGAGG AGGTGCTGCT CAACGACGAA CAGGCCAACG ACGACAATCA GGATGGCAAC
GATGGCAGCG AAGGTGATCG TCCTCGCCGC CGTTCCCGCG GTCAGCGTCG TCGCAGCAAC
CGTCGCGAGC GTCAGCGTGA TGCCAACGGC AACGTGATCG AAGGTTCTGA AGAGAACGGT
TCGGAAGAAA ACGGCGCTGA AGAAACCGTT AACGACGAAG ATAATAGCGC CACCGATCTG
TCGGCGGGTC TGGGCTTCAC CGCCGCGGCA GCAAGCGGTG TAATCAGCGC CACGGCCGAA
GCCGATGCGC ACCAGCAGGC AGAGCGCGCA AACAGCACCA CCCAAAGCGC TCCAGCCGCA
GAACCTGTGC AACAGGCTGC TGTTGCCCAT GCTCCTGTTG TCGAAACACC TGCGGTCGAA
GCACCGGTAG CTGAAACATC GGCAGTTGAA ACGCCAGCAC CTCAAGCACC GGCAGCAGAG
CAGACGGCCG AAGTGCCTGC TGTTGAAGCG CCGGTTGCAG ACGATGCGCC AGTTGCTCAG
CCTGCTCCGG AAGTGGAAGT TCAGCCTGCA GCGGTCGAAG CCCCGGCTAT TGCCGCGCAG
ACCGAGCTGT TCGAAGCACC TCACGCAGAG CGCGTCGTGC CGTTCACGCC AACGCCTGCA
CCTGCGCCAC AAGCGCCGGT CGAAGCAGCG GCTCATGAGC AAGTGCCAGC CACTGAATCA
TCCGAACTGC CAACGCCTGT CGAGGCACCT GCTGCCGAGC CTGCTGCGTT CGTGAAAGAC
GAGCCTGCTC CTTACATCGC GCCTCAAGCC GCTGTCGAGG AACAAGCATC TGCACCAGCA
GAGCAGGAAC CAGTGATCGT CGAAACACCG GCTGTACCGG TCAGCAGCAC CGGCCGTGCA
CCGAACGATC CACGTGAAGT TCGTCGCCGC AAGCGCGAAG AAGAAGCACG CCGCCAGCAG
GAAACAACTG CTGCCAGCGC GCAAGCAGAA TCGGCCCAGC CTTCCCAGGC CACCGAGGAA
AAGACTGACG TGGCGACAAC TGAGCAACCT GCAGTTCAGC CGCACCATGA AGCCGAGAAA
GAAACCGAGC CTAAACCCCT CGTTTAA
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| Protein sequence | MCAERRFRQP GNRRYYMKRM LINATQPEEL RVALVDGQRL YDLDIESGAR EQKKANIYKG
RITRIEPSLE AAFVDFGSER HGFLPLKEIS REYFKKAPEG RVNIKDVLSE GQEVIVQVEK
EERGNKGAAL TTFISLAGRY LVLMPNNPRA GGISRRIEGE ERNELREALN GLIAPADMGL
IVRTAGLGRS SEEMQWDLDY LLQLWTAIKE ASLDRSAPFL IYQESNVIIR AIRDYLRQDI
GEVLIDSVEA QEEALTFIRQ VMPQYASKIK LYEDSVPLFN RFQIESQIET AFQRVVELPS
GGSIVIDPTE ALVSIDINSA RATKGSDIEE TALQTNLEAA EEIARQLRLR DIGGLIVIDF
IDMTPAKNQR AVEEKVRESL EADRARVQVG RISRFGLLEM SRQRLRPSLG ESSGIVCPRC
NGTGIIRDVE SLSLAILRLI EEEALKDRTA EVRAQVPIPV AAFLLNEKRN SITKIELRTR
ARIIILPNDQ LETPHFEVQR LRDDSPEAHN SQTSYEIAAA AAEVEEIAPL AAATRTLVRQ
EAAVKTAPAR ANAPVPVEVA APAPTPAPVA HEPSLFKGLV KSLVSLFATK EEPVVAPAVV
EKPAAEQRPA RNEERRNGRQ QSRGRNNRRD EERKPREERA PREERAERAP REERAPREER
APREERAVRE PREAREESAP REERPARTSR ERKPREARED RPVRELREPL DAVATAAQAG
PAVNLAREER PERAPREERQ PRAPREERQP RAEQAAVAVS EEEEVLLNDE QANDDNQDGN
DGSEGDRPRR RSRGQRRRSN RRERQRDANG NVIEGSEENG SEENGAEETV NDEDNSATDL
SAGLGFTAAA ASGVISATAE ADAHQQAERA NSTTQSAPAA EPVQQAAVAH APVVETPAVE
APVAETSAVE TPAPQAPAAE QTAEVPAVEA PVADDAPVAQ PAPEVEVQPA AVEAPAIAAQ
TELFEAPHAE RVVPFTPTPA PAPQAPVEAA AHEQVPATES SELPTPVEAP AAEPAAFVKD
EPAPYIAPQA AVEEQASAPA EQEPVIVETP AVPVSSTGRA PNDPREVRRR KREEEARRQQ
ETTAASAQAE SAQPSQATEE KTDVATTEQP AVQPHHEAEK ETEPKPLV
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