| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3840 |
|---|
| Symbol | rluC |
|---|
| ID | 1185511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4345595 |
|---|
| End bp | 4346551 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | |
|---|
| Product | ribosomal large subunit pseudouridine synthase C |
|---|
| Protein accession | YP_001740053 |
|---|
| Protein GI | 170660217 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.283554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATA TTGCCCCTCC AACCCCCGGC GTTCAGCTGG TTGAGGTTGC GCCGGAACTT
GCCGGTCAAC GCATCGATAA TTTTCTGATC ACTTATCTCA AGGGTGTGCC CAAGACCTTG
ATTTACCGCA TTTTGCGCAA AGGCGAAGTG CGTGTGAACA AGGGCCGGAT CAAGCCCGAA
TATAAGTTGC AGGCAGGCGA TATCGTGCGC ATTCCCCCTG TGCGCGTGCC TGAGCGCGAC
GAGCCCGTGC CGGTTGCGCA GGCGCTGTTG CAGCGCCTCG AGGCGGCGAT TGTCTACGAA
GACAAGGCGC TGATCGTGCT CAACAAGCCT GCGGGCATTG CTGTGCACGG TGGCAGCGGC
CTCAGTTTCG GCGTGATCGA AGCCTTCCGC CAGCTGCGCC CGGACGCCAA GGAGCTTGAA
CTGGTGCATC GCCTCGATCG CGACACCTCG GGCCTGCTGA TGATTGCCAA GAAGCGCAGC
ATGCTGCGTC ACCTGCACGA AGCCCTGCGT GGCGACGGTG TCGACAAACG TTACATGGCA
CTGGTTCGCG GCAACTGGGC CACGGCGCAA AAGCAGGTGC GCGCACCATT GCTCAAGAGC
AATCTGCGCT CCGGCGAGCG GATGGTCGAA GTCAACGAGG AAGGCAAGGA GGCGCTGACG
CTCTTCAAGG TGCTGCGTCG TTTCGGCGAC TTCGCCACGA TGGTCGAGGC CAAGCCGGTG
ACCGGGCGTA CTCACCAGAT CCGCGTGCAC ACACTGCACG CCGGTCATGC CATCGCGGGC
GACACAAAGT ACGGCGACGA GAGTTTCAGT CGTGAGATTC GCGATCTGGG CGGCAAGCGT
CTGTTTCTGC ATGCCTATAT GCTGACCGTG CCGATGCCTG ATGGCAGCAA ATTGAATGTG
CAGGCACCCG TCGACGAGAT GTGGGCAAAG ACAGTGGAGC GTCTGAGTGC AACGTGA
|
|---|
| Protein sequence | MTNIAPPTPG VQLVEVAPEL AGQRIDNFLI TYLKGVPKTL IYRILRKGEV RVNKGRIKPE
YKLQAGDIVR IPPVRVPERD EPVPVAQALL QRLEAAIVYE DKALIVLNKP AGIAVHGGSG
LSFGVIEAFR QLRPDAKELE LVHRLDRDTS GLLMIAKKRS MLRHLHEALR GDGVDKRYMA
LVRGNWATAQ KQVRAPLLKS NLRSGERMVE VNEEGKEALT LFKVLRRFGD FATMVEAKPV
TGRTHQIRVH TLHAGHAIAG DTKYGDESFS REIRDLGGKR LFLHAYMLTV PMPDGSKLNV
QAPVDEMWAK TVERLSAT
|
|---|
| |