| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3828 |
|---|
| Symbol | |
|---|
| ID | 1185499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4335874 |
|---|
| End bp | 4337013 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637395180 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_793601 |
|---|
| Protein GI | 28870982 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0420652 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCCGAA AATTATTGGT GTTGCTGGAA ACCGCCATCG TTCTGGCGGT CCTGCTGCTC
GGCTTTGCTT TCTGGCAGCA GAAAGAGGCG CTGAACCAGC CGCTCAAGGT GGCTCAGGAG
CAATTGCTCG ATGTTCCGGC TGGCTCCACG CCCACCGGCG TTCTCAACCG CTTGCAAGCC
GATGGCGTGA TCAAGGACGC TTTCTGGCTG CGCCTGTACT GGCGTTTCAA CCTTTCGGGG
CAGCCCCTGC ACAGCGGTGA ATACCGCATG CTGCCGGGCA TGGACGTCAA CGCCCTGTTC
GATGTCTGGA AGCGCAAGGA AGTCGTGCAG TACAGCCTGA CGCTGGTTGA AGGCTGGAAT
TTCCGTCAGG TTCGCGCTGC GCTGGCCAAG CAGGCCAAGC TCGATCAAAC GCTCGCGGGG
CTGTCCGACA GTGAGTTGAT GGCGAAAATC GGCCACCCCG ACGTGTTCCC TGAAGGCCGC
TTCTTCCCAG ACACCTACCG CTACGTGCGC GGCATGACCG ATGCCGAATT GCTCAAACAA
GCCTATAACC GCCTGGAAGA AGTGCTGGAT GAGGAGTGGC AGGCAAGATC GTCAGAAGCG
CCTTATTCCA ATCCTTATCA AGCCCTGATC ATGGCGTCGA TGGTCGAGAA GGAAACCGGT
GTGCCTCAGG AGCGCGGGCA GATTGCAGGC GTATTCGTGC GCCGCTTGAA GCTGGGCATG
CAACTGCAGA CCGACCCGAC CGTGATCTAT GGCATGGGCG AGCGCTACAA CGGCAAGTTG
ACCCGCGCCA ATCTCAGAGA GCCCACGCCC TACAATACCT ACGTAATAGC CGGTATGCCG
CCGACACCGA TTTCGCTGGT GGGGCGCGAG GCCATTCATG CTGCGCTCAA CCCGGTGGCG
GGCAGCAGCC TGTATTTCGT CGCCAAGGGT GACGGCAGCC ATGTGTTTTC TGACGATCTT
GATGCGCACA ATTCGGCTGT GCGTGATTAT CAGCTCAAGC GCCGTGCCGA TTACCGCTCG
AGCCCCGCGC CTGCTGCGGC ACCGGCTCCG ACAGGGGAAC CTGCCGCCGA TTCGCCTGCT
TCACCACCCG AGCCCGAGAC TGCACCGGAT GCCCCGCAGT CCGAGCCGGA TACGCAATAA
|
|---|
| Protein sequence | MIRKLLVLLE TAIVLAVLLL GFAFWQQKEA LNQPLKVAQE QLLDVPAGST PTGVLNRLQA
DGVIKDAFWL RLYWRFNLSG QPLHSGEYRM LPGMDVNALF DVWKRKEVVQ YSLTLVEGWN
FRQVRAALAK QAKLDQTLAG LSDSELMAKI GHPDVFPEGR FFPDTYRYVR GMTDAELLKQ
AYNRLEEVLD EEWQARSSEA PYSNPYQALI MASMVEKETG VPQERGQIAG VFVRRLKLGM
QLQTDPTVIY GMGERYNGKL TRANLREPTP YNTYVIAGMP PTPISLVGRE AIHAALNPVA
GSSLYFVAKG DGSHVFSDDL DAHNSAVRDY QLKRRADYRS SPAPAAAPAP TGEPAADSPA
SPPEPETAPD APQSEPDTQ
|
|---|
| |