| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3791 |
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| Symbol | |
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| ID | 1185459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4293894 |
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| End bp | 4294748 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637395141 |
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| Product | rhomboid family protein |
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| Protein accession | NP_793565 |
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| Protein GI | 28870946 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGTTTGC CGCTGACTAC CGATCTGAGC GGTTTTGTTC GTTTGTTGCA GCGCTTGCAG
ATCCCTCACC GGGTCAGCGA AGAGGCTGGT GAGCAGGTGC TCTGGGTTCC GGACGCCGAG
CGGCTGGCCG ATGACGTGCG GGACTTGTAT ACGCGCTTTC CCGAGGGGGA CGAACACGTT
CAACTGGCCG ACGCTTCCCA GGCGCCCACG TACAAGGCTC CGGGCCTGAT CGAGCAGTTG
CGCAACAGCC CGGTGACAGC GCTGGTGCTG ATGGTCACTT TGCTGGTGGC GGGCCTGACG
CTGTTGGGCG ACAACCTGGA CGCCATCCGC TGGCTGACTT TTCAGGATTT TCGTATCAAT
GGCGAATACG CGACGTTTCT GCCGTTGCCT GAAACGCTGG CTTCCGGGCA ATGGTGGCGC
ATCGTCTCGC CGATGCTGAT CCACTTCGGC ATTCTGCATC TGGCCATGAA CGGCATGTGG
TTCTGGGAGC TGGGCCGGCG CATCGAAATT CGTCAGGGCA GCGTGTCCCT GTTGTTGCTG
ACGCTGCTGT TTTCAGCGGT TTCCAACTAC GTTCAATACC TGTTCAGCGG TCCAAGCCTG
TTCGGCGGCC TGTCTGGGGT GCTGTACGGG TTGCTGGGTC ATTGCTGGAT CTATCAAATG
CTGGCACCCA ACCCGGTTTA CCGGCTGCCA CGTGGCGTGT TGATCATGAT GCTGGTCTGG
CTGGCGCTGT GCCTGTCCGG TCTGGTGAGC ATGCTCGGCT TCGGCGAGAT CGCCAACGGT
GCGCATGTCG GCGGGCTGAT CATCGGCTGT ATCACCGGCC TTTTCGGTGG TGCGATTGCA
CGCCGCAAGG CCTAG
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| Protein sequence | MRLPLTTDLS GFVRLLQRLQ IPHRVSEEAG EQVLWVPDAE RLADDVRDLY TRFPEGDEHV
QLADASQAPT YKAPGLIEQL RNSPVTALVL MVTLLVAGLT LLGDNLDAIR WLTFQDFRIN
GEYATFLPLP ETLASGQWWR IVSPMLIHFG ILHLAMNGMW FWELGRRIEI RQGSVSLLLL
TLLFSAVSNY VQYLFSGPSL FGGLSGVLYG LLGHCWIYQM LAPNPVYRLP RGVLIMMLVW
LALCLSGLVS MLGFGEIANG AHVGGLIIGC ITGLFGGAIA RRKA
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