| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3766 |
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| Symbol | sbcC |
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| ID | 1185434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4264401 |
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| End bp | 4268045 |
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| Gene Length | 3645 bp |
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| Protein Length | 1214 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395116 |
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| Product | exonuclease SbcC |
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| Protein accession | NP_793540 |
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| Protein GI | 28870921 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATTC TTGCCATTCG CCTGAAAAAC CTGGCCTCGC TGGCCGGGCC GTTTGAAATT
GATTTCACCG CCGAGCCGCT GGCCAGCGCC GGCTTGTTCG CGATTACCGG GCCTACCGGC
GCGGGCAAAA GCACCTTGCT CGATGCCCTG TGCCTGGCGC TGTTCGGGGC GATTCCGCGG
CTGAGCAATA TCGGTCAGTC CAAGGTCCCG GACATCGATG GCGACATCAC CACCAGTGAC
CCGCGCACCC TGCTGCGTCG TGGCACCGGA AGCGGTTACG CCGAGGTGGA TTTCATCGGT
ATCGATCAGC GTCGCTATCG GGCCCGCTGG GAAAACAATC GCGCACGGGA CAACGCCACC
AAGAAGCTAC AGGCCAGCCG TCAGACGCTC ACCGATCTGG ACAGCGAGCA AATCCTCAGC
AACCATAGCA AGCGGGAATT CGAGCAACTG ATCGAAAGCC GTCTGGGCTT GAATTTCGAG
CAGTTCACCC GCGCCGTGAT GCTCGCCCAG AGCGAGTTCA GTGCCTTTCT AAAAGCTGAT
GACAAGGAAC GCAGCGAACT GCTGGAAAAG CTGACCAACA CTGCGATCTA CAGCCAGTTG
GGCCGGCGCG CCTACAGCAA GAGCAAGGAA GCCGAAGAAG CGCTGAAAGC CCTCACCACC
CAAGCCAGCA ACATCGTCCC GCTGGGCCCG GAGCAACTGG TCGAGCTGGA ACAGCGCTTC
AGCGACGCAC AGCAACACCT CAAAACCCAT CAAGCACAAC AGCGGCAGCT GGAACTCAAG
CAGCAATGGC TGATCGAGCT GCATCGTCTG GGTGACGAAC AGCTCGCCGC GCAGGAAGCG
CTGAACAGTG CGCAACAGAC CTGGGACCAG CAAAGCGGCG AGCGGCAAAC TCTCGGCCAA
CTGGAGCGTC TGGGCCCGCA ACGCCATCGC TTTGCCCGCC GGACCACCTT GAACGCCCAG
CTCGACCCGC TGGCCGAGCA GATTCGTCAG CATCAGGCTC AACACACCTC GCTGCAGGGC
CAGCAACAAC AGCTGGAAAC CCACCGCGCT CAGGCGCACA CCAGCCTGCT GGACGCGCAG
CAGCAACACG GCAGCGCCAA ACCGCTGTTG CAACAGGCGT TTGATGCCCA GAACACCCTC
AATCACCTGG CCCAGGAACT GACCAAGGCC TGCGACCTGC ATCAGCACAC CGGGCAGCTT
TGCGCTGAAG GTCAGGCCAG CCTGCAAACC CTGCTCGACC AGCAGCAACA GGTTGCGCAG
CGCCTTGAAC GGATTGCCGA ACAACTGCAA CGCAGCAGCG AGCTGGCCCC GCTGGCTCAG
GCCTGGAACG CCTGGCGCGA CCGCCTGAAA TCCCTGACGC TGATCGCCAA CCGCCTCAAG
CACGGGCACA GTGAGCTGCC AGCGCTGCAA CAACGCGCTG GCGTCGCCGA CCAGCAGTTG
GACGAGCAGC GCAGCGCGCT GGAATTGCTC TATCGCGAAG CCGACTGCGA AGTCGAGGCT
GTGACCGAGC AGGTGCAGAT TCTTGGCAGC CTGTTGCAGG ACAACCGTAA ACAGCAACGC
GCGTTTGAAG AACTGACTCG CCTGTGGGCC AGCCAGCAAG ACGTCGACCG TCAGCTTGCT
GATCTGACCC GGCAACAGCA AAGTGCTCAG CAGCAACGCG AACAGCTCAA CAGTGAAGGC
CTGCGGGTTC GTGACGAACT GGCAGTCGCC GAGCAGACCC TGACCGTCAC CCGGCAACTG
CTGGAGCGTC AACGCCTGGC CCGCAGCGCC AGTGTCGAAG AGCTGCGCGT GCAGTTGCAG
GACGACCAGC CCTGCCCGGT CTGCGGCAGC GTCGAGCATC CGTGGCATCA GCCCGAAGCG
TTGCTTGAAA GCCTCACCCG GCATGACGAC GACGAGCAGG CCAGCGCGCA GAAAGCGGTA
GACCTGCTGA CCGAACAGCG CAATCAGTTG CGTGAACAGG TGGGTGGCGT GATCGCTCGC
CAGAAAGAAC TGCTGCGCCA GCACGAGCAG CTTCTTGAGC GTCATCAGGC ATTGGCGCCC
GACCTTGAAG CCCATCCCCT CGCCGCTCAA TTGCTGGACC GCGACGCCGA TAAACGCGAC
GGCTGGCTGA GCCAGCAACT GAGCCAGTTG AACGAAGTCA TCGCCCGTGA CGAGCAGCGT
CAGCAGGCTT TGCTGACCTT GCAGAAAGAC GCGGCCCGTT TGCAGCAGCA GCTCCAGGCC
GCAACCGACG CCAGCCAGAC CGCTGCGCGC CATGTTGCCG AGCAACTCAA GCAACTGGAC
GCCGATCAAC AGCGTCTGGA AGAAGAACTG ACGGCGTTCA CACCGCTGGT CTCGCCGCAG
GTGCTTGAAG GCCTGCGCAG CGACGCATCG GCTACGGTGA TGCAGCTTGA GCAGCAAATC
ACCCAGCGTC TGGACCAGCT TGAGCAACAG GCTGAAGAAC AGCAGGAACA GCGCGAACGC
CAGCAGAAGC TCGAAAAGCA GCAAATCGAG CAGCAGGCGC GCCTGCAACG TCAGAGCGAA
CTGGCGCTTG AAGTCACCCG GCTCGACGCG CAGCAACAGG CCAGCCAGCA GGCACTGACC
GGTCTGCTGG GCGAGCATGC CACGGCCGAG CAATGGCAGC AGGCGCTGGA GAACGCCATC
GAGCAGGCCA GGCAAACCGA AAGCTCGGCC GCCGAGGCCT TGCAGCAGAT TCACAGCCAG
TTGATCCAGC TGGCTGGCGA ACTCAAATCC GGCCAGCAAC AGCAGCACGC CATTCAGCAA
GAGTTGGCCG AACTCGACGT GCAGATCAGT GAATGGCGCA GTCAGCACCC GGAACTGGAC
GATGCCGCGC TCGACACGCT GCTGACCTAC GATGACGCAC ACGTCGATCA ACTGCGCCAG
CAATTGCAGG CGACCGAGAA GAACCTGGAG CAGGCGAAAG TCTTGCTGCA GGAACGTGAT
CAGCGCCTGC AACAGCATCA GGCGCAGCAC AGCGACCTGA ACGACGACCA GCAACTGACC
GCCGACCTGC AAACGGCTCA GGAGCAACTG GCGCAGAGTG AGCAGCAGTG CGCCGACCTG
CGCGCCGAAC TCAGTGAAGA TCAGCGTCGC CGCAATGCCA ACAGCGAACT GCAGACGCGT
ATCGCCGACG CCAACAGCGA ATACCTGCGC TGGGCTCGTC TGGCGTCACT GATCGGTTCG
GCTGAAGGTG ATAAATTCCG CAAGATCGCT CAGGCCTACA ACCTCGATCT GCTGGTGCAT
CACGCCAATG CGCAACTCAA GCAACTGGTG CGCCGCTACC GCCTGAAACG CGGTGGAAGC
ATGCTCGGCC TGCTGGTGAT GGACACCGAA ATGGGCGATG AACTGCGCTC GGTGCATTCG
CTGTCAGGCG GGGAAACCTT TCTGGTCTCG CTGGCGTTGG CGCTGGGCCT GGCGTCGATG
GCCTCCAGCA CGCTGCGTAT CGAATCACTG TTCATCGACG AAGGCTTCGG CAGCCTCGAC
CCTGAGTCGC TGCAACTGGC CATGGACGCA CTGGACGGCT TGCAGGCACA GGGCCGCAAA
GTCGGCGTTA TCTCTCACGT ACAGGAAATG CATGAGCGAA TTCCGGTGCA GATCAGAGTG
CGTCGTCAGG GCAATGGGTT GAGTACGATC GAGGTGGGTA ACTGA
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| Protein sequence | MKILAIRLKN LASLAGPFEI DFTAEPLASA GLFAITGPTG AGKSTLLDAL CLALFGAIPR
LSNIGQSKVP DIDGDITTSD PRTLLRRGTG SGYAEVDFIG IDQRRYRARW ENNRARDNAT
KKLQASRQTL TDLDSEQILS NHSKREFEQL IESRLGLNFE QFTRAVMLAQ SEFSAFLKAD
DKERSELLEK LTNTAIYSQL GRRAYSKSKE AEEALKALTT QASNIVPLGP EQLVELEQRF
SDAQQHLKTH QAQQRQLELK QQWLIELHRL GDEQLAAQEA LNSAQQTWDQ QSGERQTLGQ
LERLGPQRHR FARRTTLNAQ LDPLAEQIRQ HQAQHTSLQG QQQQLETHRA QAHTSLLDAQ
QQHGSAKPLL QQAFDAQNTL NHLAQELTKA CDLHQHTGQL CAEGQASLQT LLDQQQQVAQ
RLERIAEQLQ RSSELAPLAQ AWNAWRDRLK SLTLIANRLK HGHSELPALQ QRAGVADQQL
DEQRSALELL YREADCEVEA VTEQVQILGS LLQDNRKQQR AFEELTRLWA SQQDVDRQLA
DLTRQQQSAQ QQREQLNSEG LRVRDELAVA EQTLTVTRQL LERQRLARSA SVEELRVQLQ
DDQPCPVCGS VEHPWHQPEA LLESLTRHDD DEQASAQKAV DLLTEQRNQL REQVGGVIAR
QKELLRQHEQ LLERHQALAP DLEAHPLAAQ LLDRDADKRD GWLSQQLSQL NEVIARDEQR
QQALLTLQKD AARLQQQLQA ATDASQTAAR HVAEQLKQLD ADQQRLEEEL TAFTPLVSPQ
VLEGLRSDAS ATVMQLEQQI TQRLDQLEQQ AEEQQEQRER QQKLEKQQIE QQARLQRQSE
LALEVTRLDA QQQASQQALT GLLGEHATAE QWQQALENAI EQARQTESSA AEALQQIHSQ
LIQLAGELKS GQQQQHAIQQ ELAELDVQIS EWRSQHPELD DAALDTLLTY DDAHVDQLRQ
QLQATEKNLE QAKVLLQERD QRLQQHQAQH SDLNDDQQLT ADLQTAQEQL AQSEQQCADL
RAELSEDQRR RNANSELQTR IADANSEYLR WARLASLIGS AEGDKFRKIA QAYNLDLLVH
HANAQLKQLV RRYRLKRGGS MLGLLVMDTE MGDELRSVHS LSGGETFLVS LALALGLASM
ASSTLRIESL FIDEGFGSLD PESLQLAMDA LDGLQAQGRK VGVISHVQEM HERIPVQIRV
RRQGNGLSTI EVGN
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