Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3748 |
Symbol | |
ID | 1185416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4235726 |
End bp | 4236934 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637395098 |
Product | multidrug resistance protein |
Protein accession | NP_793522 |
Protein GI | 28870903 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.155411 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACACTG CCGCCACTGA AAACACATCT GCAGCGTCAC AGGAAAAAAA ACCGAATTCC GGCAAACGCA AATTGCTGCT CACCGGGCTG GCGATCATCG TTGTGCTGTG CGGTCTGGCC CTCTGGGGCT GGTACCATTT TTATGGCCAG TGGAGTGAGG AGACTGACGA TGCCTACGTG AATGGCAACG TGGTTGAAAT CACGCCGTTG GTCACCGGCA CGGTCATCAG TATCGGCGCC GATGATGGCG ATCTGGTCCA CGAAGGGCAG GTTCTGCTGC AGTTCGATCC GAGCGACGCA GCGGTTTCAC TGCAAAGTGC CGAGGCCAAT CTGGGCAAGG TCGTGCGGCA GGTGCGTGGC CTTTACAGCA ATGTCGATGG CATGAAAGCG CAACTGGCCG CACAGCGCAC TGCCGTGCAG ACCGCGCAGG ACAACTACAG CCGTCGTCGC AGCCTGGCAG CGGGCGGTGC GATTTCGCAG GAAGAGCTGT CGCACGCCCG AGACAGCCTG ACCAGCGCGC AAAGTGCGTT GAACAACATT CAGCAGCAGT TGAGCACCAG CGTGGCGCTG GTCGATGACA CGGTGGTGTC CTCACACCCT GACGTCAAGG CGGCTGCCGC CCAGTTGCGT CAGGCCTTTC TGGCCAATGC ACGCAGCACG CTGGTAGCGC CGGTCACCGG TTACGTGGCC AAACGCAGCG TGCAACTGGG CCAGCGTATT CAGCCGGGCA CCGCGACCAT GGCCGTCATC CCGCTGGACC AGTTGTGGAT CGATGCAAAC TTCAAGGAAA CCCAACTGGG CAAGATGCGC ATCGGCCAGC CCGTGGAAAT CAGCTCCGAC CTGTATGGCA GTGATGTGAA ATACAGCGGC ACCATCGACA GCCTGGGCGC CGGCACCGGC AGTGCCTTCG CGCTGTTGCC TGCACAGAAC GCTACCGGTA ACTGGATCAA GATCGTCCAG CGTGTACCGG TCCGCGTGCA CATCAACCCC GAAGAGCTGG CTCAGCACCC GCTGCGCATT GGCCTGTCGA CCACGGTCGA GGTCAATCTG CACGATCAGA GCGGTCCGGT ACTGGCGCAG CAGCCGCGCA AACAGGCGGC GTTCAGCACC CAGGTGTACG CCGAGCAACT GGCCGATGCC GATGCGCTGA TCACTCGCCT GATTCACGAG AACAGTGCTG CCAGCGGCAA GACATCCGCG CAGCGCTGA
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Protein sequence | MDTAATENTS AASQEKKPNS GKRKLLLTGL AIIVVLCGLA LWGWYHFYGQ WSEETDDAYV NGNVVEITPL VTGTVISIGA DDGDLVHEGQ VLLQFDPSDA AVSLQSAEAN LGKVVRQVRG LYSNVDGMKA QLAAQRTAVQ TAQDNYSRRR SLAAGGAISQ EELSHARDSL TSAQSALNNI QQQLSTSVAL VDDTVVSSHP DVKAAAAQLR QAFLANARST LVAPVTGYVA KRSVQLGQRI QPGTATMAVI PLDQLWIDAN FKETQLGKMR IGQPVEISSD LYGSDVKYSG TIDSLGAGTG SAFALLPAQN ATGNWIKIVQ RVPVRVHINP EELAQHPLRI GLSTTVEVNL HDQSGPVLAQ QPRKQAAFST QVYAEQLADA DALITRLIHE NSAASGKTSA QR
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