Gene PSPTO_3748 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3748 
Symbol 
ID1185416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4235726 
End bp4236934 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content61% 
IMG OID637395098 
Productmultidrug resistance protein 
Protein accessionNP_793522 
Protein GI28870903 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR00998] efflux pump membrane protein (multidrug resistance protein A) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.155411 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACACTG CCGCCACTGA AAACACATCT GCAGCGTCAC AGGAAAAAAA ACCGAATTCC 
GGCAAACGCA AATTGCTGCT CACCGGGCTG GCGATCATCG TTGTGCTGTG CGGTCTGGCC
CTCTGGGGCT GGTACCATTT TTATGGCCAG TGGAGTGAGG AGACTGACGA TGCCTACGTG
AATGGCAACG TGGTTGAAAT CACGCCGTTG GTCACCGGCA CGGTCATCAG TATCGGCGCC
GATGATGGCG ATCTGGTCCA CGAAGGGCAG GTTCTGCTGC AGTTCGATCC GAGCGACGCA
GCGGTTTCAC TGCAAAGTGC CGAGGCCAAT CTGGGCAAGG TCGTGCGGCA GGTGCGTGGC
CTTTACAGCA ATGTCGATGG CATGAAAGCG CAACTGGCCG CACAGCGCAC TGCCGTGCAG
ACCGCGCAGG ACAACTACAG CCGTCGTCGC AGCCTGGCAG CGGGCGGTGC GATTTCGCAG
GAAGAGCTGT CGCACGCCCG AGACAGCCTG ACCAGCGCGC AAAGTGCGTT GAACAACATT
CAGCAGCAGT TGAGCACCAG CGTGGCGCTG GTCGATGACA CGGTGGTGTC CTCACACCCT
GACGTCAAGG CGGCTGCCGC CCAGTTGCGT CAGGCCTTTC TGGCCAATGC ACGCAGCACG
CTGGTAGCGC CGGTCACCGG TTACGTGGCC AAACGCAGCG TGCAACTGGG CCAGCGTATT
CAGCCGGGCA CCGCGACCAT GGCCGTCATC CCGCTGGACC AGTTGTGGAT CGATGCAAAC
TTCAAGGAAA CCCAACTGGG CAAGATGCGC ATCGGCCAGC CCGTGGAAAT CAGCTCCGAC
CTGTATGGCA GTGATGTGAA ATACAGCGGC ACCATCGACA GCCTGGGCGC CGGCACCGGC
AGTGCCTTCG CGCTGTTGCC TGCACAGAAC GCTACCGGTA ACTGGATCAA GATCGTCCAG
CGTGTACCGG TCCGCGTGCA CATCAACCCC GAAGAGCTGG CTCAGCACCC GCTGCGCATT
GGCCTGTCGA CCACGGTCGA GGTCAATCTG CACGATCAGA GCGGTCCGGT ACTGGCGCAG
CAGCCGCGCA AACAGGCGGC GTTCAGCACC CAGGTGTACG CCGAGCAACT GGCCGATGCC
GATGCGCTGA TCACTCGCCT GATTCACGAG AACAGTGCTG CCAGCGGCAA GACATCCGCG
CAGCGCTGA
 
Protein sequence
MDTAATENTS AASQEKKPNS GKRKLLLTGL AIIVVLCGLA LWGWYHFYGQ WSEETDDAYV 
NGNVVEITPL VTGTVISIGA DDGDLVHEGQ VLLQFDPSDA AVSLQSAEAN LGKVVRQVRG
LYSNVDGMKA QLAAQRTAVQ TAQDNYSRRR SLAAGGAISQ EELSHARDSL TSAQSALNNI
QQQLSTSVAL VDDTVVSSHP DVKAAAAQLR QAFLANARST LVAPVTGYVA KRSVQLGQRI
QPGTATMAVI PLDQLWIDAN FKETQLGKMR IGQPVEISSD LYGSDVKYSG TIDSLGAGTG
SAFALLPAQN ATGNWIKIVQ RVPVRVHINP EELAQHPLRI GLSTTVEVNL HDQSGPVLAQ
QPRKQAAFST QVYAEQLADA DALITRLIHE NSAASGKTSA QR