Gene PSPTO_3725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3725 
SymbolclpX 
ID1185390 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4206842 
End bp4208125 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content57% 
IMG OID637395072 
ProductATP-dependent Clp protease, ATP-binding subunit ClpX 
Protein accessionNP_793499 
Protein GI28870880 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1219] ATP-dependent protease Clp, ATPase subunit 
TIGRFAM ID[TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.947433 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGACA CCCGCAACGG CGAGGACAAC GGCAAATTGC TCTATTGCTC CTTCTGTGGC 
AAAAGCCAGC ATGAAGTGCG CAAATTGATT GCCGGCCCCT CGGTCTTTAT CTGCGACGAG
TGCGTCGACC TGTGCAATGA CATCATCCGC GAGGAGGTGC AGGAAGCACA GGCAGAAAGC
AGCGCGCATA AATTGCCTTC GCCTAAAGAA ATCAGCGGCA TCCTTGACCA GTATGTAATC
GGTCAGGAAC GTGCCAAAAA GGTTCTCGCA GTAGCGGTGT ACAACCACTA CAAGCGTCTG
AACCAGCGCG ACAAGAAGAA CGACGATGTC GAGCTGGGCA AGAGCAACAT CCTGCTGATC
GGCCCTACGG GCTCCGGCAA GACGCTGCTG GCTGAAACAC TGGCCCGCCT GCTTAACGTG
CCGTTTACCA TTGCCGACGC CACCACCCTG ACCGAAGCCG GTTATGTGGG TGAGGACGTC
GAAAACATTA TCCAGAAGCT GTTGCAGAAA TGTGATTACG ATGTCGAGAA GGCCCAGATG
GGTATTGTCT ACATCGATGA AATCGACAAG ATTTCGCGCA AATCCGACAA CCCTTCGATC
ACTCGTGACG TTTCCGGTGA AGGCGTGCAA CAGGCCTTGC TGAAACTGAT CGAGGGCACC
GTGGCTTCCG TTCCGCCTCA AGGTGGTCGC AAGCATCCGC AGCAGGAATT CCTGCAGGTG
GACACGCGCA ACATCCTCTT CATATGCGGT GGCGCCTTCT CGGGCCTGGA AAAGGTCATT
CAGAACCGTT CCACCCGTGG CGGCATCGGT TTCAACGCCG AAGTTCGCAG CAAGGAGGAG
GGCAAGAAGG TGGGCGAGTC CCTGCGTGAG GTCGAGCCTG ACGATCTGGT CAAGTTTGGT
CTGATCCCGG AATTCGTCGG TCGTCTGCCG GTGCTTGCAA CGCTGGACGA GCTGGATGAG
GCTGCTTTGA TTCAGATCCT CACCGAGCCG AAAAACGCGT TGACCAAGCA GTACGCCAAG
CTGTTCGAAA TGGAAGGCGT GGACCTCGAG TTCCGCACCG ACGCGCTGAA ATCGGTTGCC
CGTCGTGCGC TGGAGCGCAA GACCGGTGCT CGTGGCCTGC GCTCCATCCT CGAAGGCGTG
CTGCTCGACA CCATGTACGA GATCCCGTCG CAAAGCGACG TGAGCAAGGT GGTGATCGAC
GAGAGCGTTA TCGATGGCAC GTCCAAGCCG TTGCTGATCT ACGAAAACAG CGAGCCACCC
GCCAAGGCTG CTCCTGACGC GTAA
 
Protein sequence
MTDTRNGEDN GKLLYCSFCG KSQHEVRKLI AGPSVFICDE CVDLCNDIIR EEVQEAQAES 
SAHKLPSPKE ISGILDQYVI GQERAKKVLA VAVYNHYKRL NQRDKKNDDV ELGKSNILLI
GPTGSGKTLL AETLARLLNV PFTIADATTL TEAGYVGEDV ENIIQKLLQK CDYDVEKAQM
GIVYIDEIDK ISRKSDNPSI TRDVSGEGVQ QALLKLIEGT VASVPPQGGR KHPQQEFLQV
DTRNILFICG GAFSGLEKVI QNRSTRGGIG FNAEVRSKEE GKKVGESLRE VEPDDLVKFG
LIPEFVGRLP VLATLDELDE AALIQILTEP KNALTKQYAK LFEMEGVDLE FRTDALKSVA
RRALERKTGA RGLRSILEGV LLDTMYEIPS QSDVSKVVID ESVIDGTSKP LLIYENSEPP
AKAAPDA