| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3706 |
|---|
| Symbol | acdA |
|---|
| ID | 1185371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4180427 |
|---|
| End bp | 4181578 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637395053 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | NP_793480 |
|---|
| Protein GI | 28870861 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACGATC TTGAATTGAC CGAAGAGCAG GTAATGATTC GCGACATGGC GCGCGACTTT
GCCCGCAACG AAATCGCCCC GCATGCCCAG GCCTGGGAAA AAGCGGGCTG GATCGATGAC
GCACTGGTTG CCAAACTCGG CGAGCTGGGC CTGCTGGGCA TGGTGGTCCC GGAGCAATGG
GGCGGCACCT ACATAGACTA CGTTGCCTAT GCACTCGCGG TTGAGGAAAT CTCCGCCGCC
GACGCCGCCA CCGGCACGCT GATGAGCGTT CATAGCTCGG TGGGTTGCGG TCCGGTCCTC
AACTACGGGA CCGATGAGCA AAAACACACC TGGCTGGAAA AGCTTGCCAC CGGCCGGGCC
ATTGGTTGCT TCTGCCTGAC CGAACCGCAT GCGGGCTCCG AAGCGCATAA CCTGCGCACG
CGCGCCGAAC TGCAAGGTGA CGAATGGGTC ATCAATGGCG CCAAACAGTT CGTCAGCAAT
GGCAAACGGG CGCAGTTGGC AATCGTGTTT GCCGTGACCG ATCCCGAGCT TGGCAAAAAG
GGCCTGTCGG CGTTTCTGGT GCCGACCGAC AATCCCGGTT TTGTGGTGGA CCGCAGCGAG
CACAAGATGG GCATTCGCGC CTCCGATACC TGTGCGGTCA CGCTGAATAA CTGCCGTATC
CCGGCAGCCG GTCTTTTGGG GGAACGTGGC AAAGGGTTGT CTATCGCCCT CTCCAATCTG
GAAGGTGGCC GTATCGGTAT CGCAGCCCAG GCGCTGGGCA TAGCCCGAGC GGCCTTTGAA
GCGGCGCTGG CCTATGCGCG TGAACGCGTG CAGTTCGACA AGCCGATAAT CGAGCACCAG
AGCATCGCCA ACCTGCTGGC CGACATGCAC ACCCGCATCA ATGCCTCACG GCTGTTGATT
CTGCATGCCG CGCGCCTGCG CAGCGCCGGG CAGCCTTGCC TGTCAGAAGC TTCACAGGCC
AAGCTGTTCG CCTCGGAGAT GGCCGAATGG GTGTGCTCCA AGGCGATTCA GATTCATGGT
GGTTATGGCT ATCTGGAGGA CTACCCGGTC GAGCGTTATT ACCGCGACGC CCGCATTACC
CAGATCTATG AAGGTTCCAG TGAAATCCAG CGCCTGCTGA TTGCACGGGA ACTGCGTCAC
TATCTGGTCT GA
|
|---|
| Protein sequence | MHDLELTEEQ VMIRDMARDF ARNEIAPHAQ AWEKAGWIDD ALVAKLGELG LLGMVVPEQW
GGTYIDYVAY ALAVEEISAA DAATGTLMSV HSSVGCGPVL NYGTDEQKHT WLEKLATGRA
IGCFCLTEPH AGSEAHNLRT RAELQGDEWV INGAKQFVSN GKRAQLAIVF AVTDPELGKK
GLSAFLVPTD NPGFVVDRSE HKMGIRASDT CAVTLNNCRI PAAGLLGERG KGLSIALSNL
EGGRIGIAAQ ALGIARAAFE AALAYARERV QFDKPIIEHQ SIANLLADMH TRINASRLLI
LHAARLRSAG QPCLSEASQA KLFASEMAEW VCSKAIQIHG GYGYLEDYPV ERYYRDARIT
QIYEGSSEIQ RLLIARELRH YLV
|
|---|
| |