Gene PSPTO_3621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3621 
Symbol 
ID1185286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4083582 
End bp4085015 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content64% 
IMG OID637394971 
Productouter membrane efflux protein 
Protein accessionNP_793398 
Protein GI28870779 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.21353 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGCG CTTTACGCGT GGCGGCCCTG GGGTTCAGTG CAGTGCTGTC GGCCTGCCAG 
ATGGTCGGGC CGGATTACCA ACTGCCGAAA GACGGCGCGA TCAATCGCCC GGATTTACAG
GGCGAACTGG CCGGCCGTTC GGTCAACACC GTTTCGGCGC CAGTGCCTGC GCACTGGTGG
CGGCTGTATC AGGATGCGCG TCTGGATGAA CTGGTGCGCC AGGCCATCGC CTCCAATACC
GACCTGCGCA TTGCTGCCGC CAACCTGCAA CGTTCTCGCT ATCAGACGTC CGAAGCCCAG
GCCGCAGGCG GTTTTACCAA CGGTGCGAAG ATCGGCGCGC AGCGTGTGCA GGAATCGGGC
GAGGCGTATC TATTGACCGA AAAGGTGCCG GTGTCCAACG TCGGCGACGT TGGCCTGACC
ACTTCGTATC AGTTCGACCT GTTTGGCACG TTGCAGCGCG GCATCGAAGC TGCGCAGGCC
AATGTCGATG CCAATCAGGC GGCGGTCGAT ACGGCGCGCA TCACGGTGGT CGCCGATGTG
GTGCGGGCCT ACACACAGAT CTGCGCGGCC AACGAAGAAC TCGGCATCGC CCGCGAATCG
CTGGCCCTGC AACAGCAGAG CGTGACCCTC AACCAGCGCC TGCGCGATGC GGGCCGTGGC
GATGAAACCC AGGTCACGCG CTCACAGACG CAGTTCAAAT CGTTACGTGC CGAAATGCCA
CGTTACGAGG CGCGACGTCA GGCGGCGATG TTCCGCCTGT CGATGCTGCT GGCCAAACCT
GTGGAACAAT TACCTGTCGG GGTCAGCACC TGTAACGAAC TGCCGCACAT CGCACAGGTC
ATGCCGGTGG GCGATGGCGC CACACTGCTC AAACGCCGCC CGGATGTGCG TCAGGCTGAA
CGTCATCTGG CGATGTCGAC GGCCGAAATT GGTGTGGCCA CCGGCGAGTT GTATCCAGAC
ATCAGCATTG GCGCGAGCAT CGGCACCACC GGCCTGATCG AGAACCTCGG CAAACCGGCC
GCCAACCGCT GGGGCTTCGG GCCACTGCTG AACTGGACCC TCCCGTCCAA CGGCTCTCGG
GCACGCATCC ATCAAGCCGA AGCGTCGGCG CAGGCATCGT TGGCACGCTT TGACGGCGTG
GTGCTCAACG CCATCCGTGA GACCCAGACC GGCCTTGCGC AATACACCGC CCTGCTCGAC
CGCCGCGATG CCCTCAAGGA AGCCGAACAA TCGGCCAGAG AAGCTGCTGA CCAGACCCAC
CGCTTCTACG AGGCCGGACG CGCCTCGTTC CTCGCCGACC TGCAAGCCAC CCGCACCTAC
ACCGACGTAC GCGCACAGAT GGCCGAAGCC AACACCGAAG TGGCCATGGG GCAGATCAAC
CTGTTTCTGG CGCTGGGTGG AGGTTGGGAG AAGGATGACG TGGCGCAGAA GTAG
 
Protein sequence
MKRALRVAAL GFSAVLSACQ MVGPDYQLPK DGAINRPDLQ GELAGRSVNT VSAPVPAHWW 
RLYQDARLDE LVRQAIASNT DLRIAAANLQ RSRYQTSEAQ AAGGFTNGAK IGAQRVQESG
EAYLLTEKVP VSNVGDVGLT TSYQFDLFGT LQRGIEAAQA NVDANQAAVD TARITVVADV
VRAYTQICAA NEELGIARES LALQQQSVTL NQRLRDAGRG DETQVTRSQT QFKSLRAEMP
RYEARRQAAM FRLSMLLAKP VEQLPVGVST CNELPHIAQV MPVGDGATLL KRRPDVRQAE
RHLAMSTAEI GVATGELYPD ISIGASIGTT GLIENLGKPA ANRWGFGPLL NWTLPSNGSR
ARIHQAEASA QASLARFDGV VLNAIRETQT GLAQYTALLD RRDALKEAEQ SAREAADQTH
RFYEAGRASF LADLQATRTY TDVRAQMAEA NTEVAMGQIN LFLALGGGWE KDDVAQK