Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3621 |
Symbol | |
ID | 1185286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4083582 |
End bp | 4085015 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637394971 |
Product | outer membrane efflux protein |
Protein accession | NP_793398 |
Protein GI | 28870779 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.21353 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGCG CTTTACGCGT GGCGGCCCTG GGGTTCAGTG CAGTGCTGTC GGCCTGCCAG ATGGTCGGGC CGGATTACCA ACTGCCGAAA GACGGCGCGA TCAATCGCCC GGATTTACAG GGCGAACTGG CCGGCCGTTC GGTCAACACC GTTTCGGCGC CAGTGCCTGC GCACTGGTGG CGGCTGTATC AGGATGCGCG TCTGGATGAA CTGGTGCGCC AGGCCATCGC CTCCAATACC GACCTGCGCA TTGCTGCCGC CAACCTGCAA CGTTCTCGCT ATCAGACGTC CGAAGCCCAG GCCGCAGGCG GTTTTACCAA CGGTGCGAAG ATCGGCGCGC AGCGTGTGCA GGAATCGGGC GAGGCGTATC TATTGACCGA AAAGGTGCCG GTGTCCAACG TCGGCGACGT TGGCCTGACC ACTTCGTATC AGTTCGACCT GTTTGGCACG TTGCAGCGCG GCATCGAAGC TGCGCAGGCC AATGTCGATG CCAATCAGGC GGCGGTCGAT ACGGCGCGCA TCACGGTGGT CGCCGATGTG GTGCGGGCCT ACACACAGAT CTGCGCGGCC AACGAAGAAC TCGGCATCGC CCGCGAATCG CTGGCCCTGC AACAGCAGAG CGTGACCCTC AACCAGCGCC TGCGCGATGC GGGCCGTGGC GATGAAACCC AGGTCACGCG CTCACAGACG CAGTTCAAAT CGTTACGTGC CGAAATGCCA CGTTACGAGG CGCGACGTCA GGCGGCGATG TTCCGCCTGT CGATGCTGCT GGCCAAACCT GTGGAACAAT TACCTGTCGG GGTCAGCACC TGTAACGAAC TGCCGCACAT CGCACAGGTC ATGCCGGTGG GCGATGGCGC CACACTGCTC AAACGCCGCC CGGATGTGCG TCAGGCTGAA CGTCATCTGG CGATGTCGAC GGCCGAAATT GGTGTGGCCA CCGGCGAGTT GTATCCAGAC ATCAGCATTG GCGCGAGCAT CGGCACCACC GGCCTGATCG AGAACCTCGG CAAACCGGCC GCCAACCGCT GGGGCTTCGG GCCACTGCTG AACTGGACCC TCCCGTCCAA CGGCTCTCGG GCACGCATCC ATCAAGCCGA AGCGTCGGCG CAGGCATCGT TGGCACGCTT TGACGGCGTG GTGCTCAACG CCATCCGTGA GACCCAGACC GGCCTTGCGC AATACACCGC CCTGCTCGAC CGCCGCGATG CCCTCAAGGA AGCCGAACAA TCGGCCAGAG AAGCTGCTGA CCAGACCCAC CGCTTCTACG AGGCCGGACG CGCCTCGTTC CTCGCCGACC TGCAAGCCAC CCGCACCTAC ACCGACGTAC GCGCACAGAT GGCCGAAGCC AACACCGAAG TGGCCATGGG GCAGATCAAC CTGTTTCTGG CGCTGGGTGG AGGTTGGGAG AAGGATGACG TGGCGCAGAA GTAG
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Protein sequence | MKRALRVAAL GFSAVLSACQ MVGPDYQLPK DGAINRPDLQ GELAGRSVNT VSAPVPAHWW RLYQDARLDE LVRQAIASNT DLRIAAANLQ RSRYQTSEAQ AAGGFTNGAK IGAQRVQESG EAYLLTEKVP VSNVGDVGLT TSYQFDLFGT LQRGIEAAQA NVDANQAAVD TARITVVADV VRAYTQICAA NEELGIARES LALQQQSVTL NQRLRDAGRG DETQVTRSQT QFKSLRAEMP RYEARRQAAM FRLSMLLAKP VEQLPVGVST CNELPHIAQV MPVGDGATLL KRRPDVRQAE RHLAMSTAEI GVATGELYPD ISIGASIGTT GLIENLGKPA ANRWGFGPLL NWTLPSNGSR ARIHQAEASA QASLARFDGV VLNAIRETQT GLAQYTALLD RRDALKEAEQ SAREAADQTH RFYEAGRASF LADLQATRTY TDVRAQMAEA NTEVAMGQIN LFLALGGGWE KDDVAQK
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