Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3574 |
Symbol | |
ID | 1185239 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4030399 |
End bp | 4032519 |
Gene Length | 2121 bp |
Protein Length | 706 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394926 |
Product | TonB-dependent siderophore receptor, putative |
Protein accession | NP_793353 |
Protein GI | 28870734 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGCATCT CCTCCCAACG CCCTCGCCGT CCCGGCCCTT TTCTGTTGTC TGCGCTGTCT CTGGCAATGT TCTCCAGCGG TCCAGTGCAT GCAGCAGAAA CCGCCACGCT GCCTGCCACG CAGGTTTCCG CCGCGGCCTC CGAAGCCTCG GAAGGCTACA ACGCCAAAAG CACCAGCACC GCGAGCAAGA GCGATGTGCC TATCAAGGAA GAGGCACAAT CGGTCAACGT CGTCACGCCA CAGACGATCG CCGATTACAA CGTGCGCTCG CTGGACGACG CCATGAAATT TGTCAGCGGC GTCAGTCAGG GTAATACCTT GGGCAACACC AAGGACTCGG TGATCAAGCG CGGTTTCGGC ACCAACGATG ACGGCTCGAT CCTGCGCGAT GGCGTACGTT CGGTGGTGTC GAAGAATTTC GGCGCGACCA CCGAGCGTGT CGAGGTGCTC AAAGGCCCTG CATCGCTGCT GTACGGGGCG ATGGAACCGG GCGGCGTGAT CAACGTGATC AGCAAACAGC CACAGTACGT GCAAAGCACC ACTCTGAGCG GTTCTGCGTA CAGTGAAGGT GGCGGCAGCT TCAGCGTCGA CACCACCGGC CCGCTGGGCG ATTCCGGGCT GGCCTACCGG CTGGTGGCTG AACGTCAGAG CGAGGACTAC TGGCGTAACT ACGGCGTTGA CCAGCACACG CTGATCGCGC CATCGCTGTC CTGGACCGGT GAGCGCGCCA GCCTGACCCT GGCCTACGAA TACAACGATT ACATCAGCCC GTTCGACCGC GGCACTGTTT TCACCGGCGG CCACCCGGCA GACATCAGCT ATGACAAGCG TCTCGACGAG AAGTGGTCAA ACACGGTCGG CATCAGCGAA ACCGCAACCG CACGTTTCGA GTATCAGCTC AGCGACGACT GGAAAACCCG CCTGACCTAT GGCTGGAACA ATGACCGCTA CAGCCTCTCG ATAGCCCAGC CCAGCACTCT GTCGAGCAGC GGCGTGTTGC GTCGTCAGGC CAACGGCGGC CACTACGATT ACGAAACCCG TTACGCCAGC TGGGACTTCA TCGGCAAGCA GGACATTCTC GGCCAGCAGC ACGATCTGCT GATCGGCGCC GAGCAGGAAG ACTCCGACAA GTATCGCGGC AAGACTTACC GCAACACGGC TCAAAACGGC TTCAATATCT TCTCGCCGGC TTATGGCAGC CTGGCCGAGC CCAGTGTCGT CAGCGCGGCG AACAGCAACC TGAGCAATCA GCTGACTTCG TCTTCGCTGT ACCTCAAGGA CAACTGGCAC CTTAACGATC GCTGGATTCT GGTGCTTGGC GGCCGTTATC AGCACTATGA CCAGTACATC AAACAAGGCC TTGGTGCCAG CCGCGTCACT AACCTGGACA AAAACGACGA TGTGTTCCTG CCGATGGCCG GCCTGGTGTT CAAGGTCAAT GAAGACCTGT CGCTGTACGG CAACTACAGC CGTTCGTTCG TACCCAATGA TGACGTGAAC GACGATGGCA CGACCTTCGA CCCGGAAGAA GGTCGCAGCT ATGAAGTTGG CGCCAAATAC GCACTTGCGC CGGAACTCAA CTTCAACCTT GCAGTGTTCG ATATCGAGAA GAAAAACGTC GTTACCCCGA CCGGCGTTAC CGGCGTCAGC GAAGCGGCGG GCAAGGTGGG CTCGCAAGGC GTAGAGCTGG ACGTGACCGG GCGCATCGCC GAGCGTTGGG ATATGATCGG CACTTACGCC TACACCCACA CCGAAGTGCT CGATGACCCA AGCAACAAGG GCAATCGTTT GAGTCAGGCG CCGAAACATA CCGCCAGCCT GTACCTCACC CACCACCTGC AGATTCCTTC GGACCTGGGC GAATGGCATG CCGGTGGTGG CGCGCGTTAC GTTGGCGAGC GCGCTGGCGA CGATGCCAAC ACCTTCTATA TGAGCAGCTA CACCGTAGCC GATGCGTTTT TGCGCTGGGA CGTGCCGATG GCCGGGTATA AAACCCGCCT GCAATTGAAC GTGGACAACC TGTTTGACAA GCAGTACTAC CCGTCAAGCA CCGGTAGCCA GTTGCAGGTC AACGTGGGCG AGCCGCGCAC CGCACGCTTG AGCGCCAGCG TCACGTTTTA A
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Protein sequence | MSISSQRPRR PGPFLLSALS LAMFSSGPVH AAETATLPAT QVSAAASEAS EGYNAKSTST ASKSDVPIKE EAQSVNVVTP QTIADYNVRS LDDAMKFVSG VSQGNTLGNT KDSVIKRGFG TNDDGSILRD GVRSVVSKNF GATTERVEVL KGPASLLYGA MEPGGVINVI SKQPQYVQST TLSGSAYSEG GGSFSVDTTG PLGDSGLAYR LVAERQSEDY WRNYGVDQHT LIAPSLSWTG ERASLTLAYE YNDYISPFDR GTVFTGGHPA DISYDKRLDE KWSNTVGISE TATARFEYQL SDDWKTRLTY GWNNDRYSLS IAQPSTLSSS GVLRRQANGG HYDYETRYAS WDFIGKQDIL GQQHDLLIGA EQEDSDKYRG KTYRNTAQNG FNIFSPAYGS LAEPSVVSAA NSNLSNQLTS SSLYLKDNWH LNDRWILVLG GRYQHYDQYI KQGLGASRVT NLDKNDDVFL PMAGLVFKVN EDLSLYGNYS RSFVPNDDVN DDGTTFDPEE GRSYEVGAKY ALAPELNFNL AVFDIEKKNV VTPTGVTGVS EAAGKVGSQG VELDVTGRIA ERWDMIGTYA YTHTEVLDDP SNKGNRLSQA PKHTASLYLT HHLQIPSDLG EWHAGGGARY VGERAGDDAN TFYMSSYTVA DAFLRWDVPM AGYKTRLQLN VDNLFDKQYY PSSTGSQLQV NVGEPRTARL SASVTF
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