Gene PSPTO_3553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3553 
SymbolhppD 
ID1185218 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp4009715 
End bp4010806 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content59% 
IMG OID637394906 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionNP_793333 
Protein GI28870714 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.225452 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGATC TCTACGAAGC TGACAAGTAT GAAAATCCGA TGGGCCTGAT GGGCTTTGAA 
TTCATCGAAT TCGCCTCGCC GACCCCCAAC AGCCTTGAGC CCGTGTTCCA GATGATGGGC 
TTCACCAAGG TCGCGACCCA CCGCTCCAAG GACGTGACCC TGTATCGCCA GGGGGCGATC 
AACCTGATCC TCAATAACGA ACCGCATAGC CTGGCGTCCT ACTTTGCGGC CGAACACGGG 
CCTTCGGTAT GTGGCATGGC GTTCCGCGTC AAGGACGCAC AGCACGCCTA TAACCGGGCA 
CTGGAACTGG GCGCGCAGCC GCTGGAGATC GCCACTGGCC CTATGGAATT GCGCTTGCCT 
GCCATCAAGG GTATCGGCGG TGCGCCGTTG TACCTCATCG ACCGGTTTGG CGAAGGCACG 
TCGATCTACG ACATCGATTT CAACTTTATC GAAGGCGTTG ACCGTCATCC GGTCGGCGCG 
GGCCTGAAAT TCATCGATCA TCTGACCCAT AACGTATATC GCGGGCGCAT GGCTTACTGG 
GCGAATTTCT ATGAAAAGCT GTTCAACTTC CGCGAACTGC GCTACTTCGA CATCAAGGGC 
GAATACACCG GCCTGACGTC CAAGGCCATG AGCGCGCCGG ACGGCATGAT CCGCATCCCG 
CTGAACGAGG AGTCGTCCAA GGGCGCAGGG CAGATCGAAG AGTTCCTCAT GCAGTTCAAC 
GGTGAAGGCA TCCAGCACGT GGCGTTCTTC ACCGATGACC TGATCAAGAC CTGGGATGCG 
CTGAAAGCCA CCGGCATGCG CTTCATGACC GCACCGCCGG ACACCTACTA CGAAATGCTT 
CAGGGCCGGT TGCCTGATCA CGGCGAGCCG GAAGCCGAAC TCAAGTCGCG CGGCATTCTG 
CTGGACGGCT CATCCGAAGG CGGCGAGCGT CGGTTGCTGC TGCAGATATT CTCCGCCACC 
CTGATGGGGC CAGTGTTTTT CGAGTTCATC CAGCGCAAAG GCGACGATGG CTTTGGCGAA 
GGCAACTTCA AGGCGCTGTT CGAATCCATC GAGCGCGACC AGATCCAGCG CGGGGTGCTG 
ACGCCGGATT GA
 
Protein sequence
MADLYEADKY ENPMGLMGFE FIEFASPTPN SLEPVFQMMG FTKVATHRSK DVTLYRQGAI 
NLILNNEPHS LASYFAAEHG PSVCGMAFRV KDAQHAYNRA LELGAQPLEI ATGPMELRLP 
AIKGIGGAPL YLIDRFGEGT SIYDIDFNFI EGVDRHPVGA GLKFIDHLTH NVYRGRMAYW 
ANFYEKLFNF RELRYFDIKG EYTGLTSKAM SAPDGMIRIP LNEESSKGAG QIEEFLMQFN 
GEGIQHVAFF TDDLIKTWDA LKATGMRFMT APPDTYYEML QGRLPDHGEP EAELKSRGIL 
LDGSSEGGER RLLLQIFSAT LMGPVFFEFI QRKGDDGFGE GNFKALFESI ERDQIQRGVL 
TPD