Gene PSPTO_3545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3545 
Symbol 
ID1185210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp4001872 
End bp4002549 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content59% 
IMG OID637394898 
ProductThiJ/PfpI family protein 
Protein accessionNP_793325 
Protein GI28870706 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.809418 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCC TGATGGTTCT GACTTCCCAT GACCAACTGG GCGACACCGG CAAGAAAACC 
GGTTTCTGGC TCGAAGAGTT TGCTGCGCCG TACTACGTGT TTAAAGATGC CGGCGCCGAA 
GTCACGCTGG TTTCGCCTGC TGGCGGTCAA CCGCCGCTTG ACCCGAAAAG CGATGAGCCT 
GACGCACAGA CCGCTGAAAC CGAGCGTTTC GCCAAAGACG CCGATGCTCA GAAAGTGCTG 
GCCAATACTG GTCTTCTCGC CGAGGTCAAC GCTGCCGATT TCGACGCAGT GTTCTATCCG 
GGCGGCCATG GCCCACTATG GGACCTGGCA GAAGACCAGC ATTCCATTGC TCTGATCGAA 
GCATTCGCCA AGGCTGACAA GCCGCATGGC CTGGTGTGCC ACGCGCCCGG CGTGCTGCGT 
AAAGTCAAAG CGCAAAATGG CGAGCCGCTG GTCAAGGGCC GTCGCGTTAC CGGCTTTACC 
AACAGCGAAG AAGAAGCAGT TGGCCTTACC GACGTGGTGC CGTTTCTGGT CGAAGACGCA 
CTCAAGGAAC TGGGCGGCGA CTACTCCAAG GGCGATGACT GGAGCGTTTA CGTGCTGACC 
GACGGCAAGC TGGTCACCGG GCAGAACCCG GCCAGTTCTG CGCAGGCGGC CAAAGACGTG 
CTGACCTTGC TGAGCTGA
 
Protein sequence
MKILMVLTSH DQLGDTGKKT GFWLEEFAAP YYVFKDAGAE VTLVSPAGGQ PPLDPKSDEP 
DAQTAETERF AKDADAQKVL ANTGLLAEVN AADFDAVFYP GGHGPLWDLA EDQHSIALIE 
AFAKADKPHG LVCHAPGVLR KVKAQNGEPL VKGRRVTGFT NSEEEAVGLT DVVPFLVEDA 
LKELGGDYSK GDDWSVYVLT DGKLVTGQNP ASSAQAAKDV LTLLS