| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3529 |
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| Symbol | |
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| ID | 1185194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3982432 |
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| End bp | 3983868 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637394882 |
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| Product | capsular polysaccharide biosynthesis protein PslA |
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| Protein accession | NP_793309 |
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| Protein GI | 28870690 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
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| TIGRFAM ID | [TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.988428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGTTGC AGCCCGTTGA CAGTCTTTCA CTCACCCGTA CCAGCCTGGT CGAATACTTT
CTGTTCGGCA TCCGCCTGGC TCACGGTGTT GCCTGCATTC TGCCCGGCCT GGCGATTCTC
TTGCTGATCA AGGACAGCAG CCTGCATACA CCGCAAAGTT ACCTGACCAT GTTGCTGTTT
TTCGGCTGTG TCGGCGTACT GGTGTTTCAG GCCATGGGCG TTTATTCCGA GGTCCTGTTC
AGCAATGACC TGCGCATGGG CGCGATGGCA CTTGCCTGGA CGGCCGCCTT CGGGCTTTTG
CTGTTCATGC AGCAGGCAAT GGGGCTGTTC GGTTATCTCT CCAACGAAGA ACTGCTTATC
TGGTACCTGA CCAGCCTTGC ACTGTTCGGC GTCATTCGCC TGTTGCTGCT GATGCTGTTC
AAGCACCAGA TGCGCAAGGG TGTGTTTCTG CAAAACGCGG TGATTCTGGG TGCCACGGAA
AACGGTCTGC GTCTGGCCGA ATACCTGCTT GAACATCAGG ACATTCGTTC GGGCGTGATC
GGCTTTATCG ATGACCGCAT CGGCCGCATG CCCAAGACTG TCGCCAATCT TCCGCTGCTG
GGCAACACCA GCGATCTGGA ACGGCTGATT CGTGAAGAGA AAGTGACCCA GGTGCTGGTG
GCCCTGCCGT GGACCGCGGA AAACCGCATG GATTACATCA TCCGCGAGCT GCGCCGGTTA
CCGGTCAATG TGCTGCTGGT GCCCGACATG ATTGCTTTTC GGCACACCCA CAACCGCATT
ACCGAAGTCG CCAGGCTGCC GATGTTCAAC GCCTCGGACT TGCCCCTCAA CGGTTGGTCA
CCGTTCATCA AGCGCGCTGA AGATATCGTC CTCTCCTCGC TGGCCTTGCT GCTTCTGTCG
CCGGTGATGC TGCTGGTCGC GCTGGCGATC AAGCTCGATT CGTCAGGCCC GGTGCTGTTC
CGCCAGAAGC GTTATGGCTA CAACAATCGC CTGATCGAAG TGTTCAAGTT CCGCTCCATG
CATCAGCACC AGGCTGACGC GACGGCCGAG CAACAGACTA CCCGGGGCGA TTCCAGAATC
ACCCGCGTCG GGCGTTTCAT TCGCAAGACC AGCCTGGATG AACTGCCCCA ACTGTTCAAC
GTGGCAGCGG GGAGCATGTC GATGGTAGGG CCGCGCCCGC ATGCGACAGC GACCAAGGCA
GCCGGCATCC TATTCGAGCA AGCGGTGAAG GAGTACACGT CGCGACATCG CGTCAAACCC
GGGATTACCG GGCTGGCGCA GATCAACGGC TATCGTGGTG AAACAGACAC CGTGGAAAAA
ATCGAAAAAC GCGTCGAGTT CGATCTTGAG TACATAGAAA ACTGGTCCGT CTGGTTCGAC
CTGTACATCC TAATGCGCAC TGTGCCTGCA GTGCTATTCA CTCGTGAGGC TTATTGA
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| Protein sequence | MRLQPVDSLS LTRTSLVEYF LFGIRLAHGV ACILPGLAIL LLIKDSSLHT PQSYLTMLLF
FGCVGVLVFQ AMGVYSEVLF SNDLRMGAMA LAWTAAFGLL LFMQQAMGLF GYLSNEELLI
WYLTSLALFG VIRLLLLMLF KHQMRKGVFL QNAVILGATE NGLRLAEYLL EHQDIRSGVI
GFIDDRIGRM PKTVANLPLL GNTSDLERLI REEKVTQVLV ALPWTAENRM DYIIRELRRL
PVNVLLVPDM IAFRHTHNRI TEVARLPMFN ASDLPLNGWS PFIKRAEDIV LSSLALLLLS
PVMLLVALAI KLDSSGPVLF RQKRYGYNNR LIEVFKFRSM HQHQADATAE QQTTRGDSRI
TRVGRFIRKT SLDELPQLFN VAAGSMSMVG PRPHATATKA AGILFEQAVK EYTSRHRVKP
GITGLAQING YRGETDTVEK IEKRVEFDLE YIENWSVWFD LYILMRTVPA VLFTREAY
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