| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3517 |
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| Symbol | fadB |
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| ID | 1185182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3967722 |
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| End bp | 3969887 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637394870 |
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| Product | fatty oxidation complex, alpha subunit |
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| Protein accession | NP_793297 |
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| Protein GI | 28870678 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.330047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTACG AAGGTAAAGC CATCACGGTT AAGGCTCTTG AAAGTGGCAT CGTCGAATTG
AATTTCGACC TCAAGGGTGA GTCCGTCAAC AAGTTCAACC GCCTCACCCT CAACGAGTTG
CGTCAGGCGG TCGACGCCGT CAAGGCCGAC GCATCGGTCA AGGGCGTGAT CGTCACCAGC
GGCAAGGACG TGTTCATCGT CGGTGCCGAC ATCACCGAGT TCGTCGACAA CTTCAAGTTG
CCGGAAGCCG AACTGGTTGC GGGCAATCTG GAAGCCAACA GGATTTTCAG CGATTTCGAA
GACCTGGGCG TGCCCACCGT TGTCGCCATC AACGGCATTG CGCTGGGTGG TGGTCTGGAA
ATGTGCCTGG CCGCAGACTA TCGAGTCATC TCCAGCAGCG CCCGTGTCGG CCTGCCGGAA
GTCAAGCTGG GCCTGTATCC AGGTTTCGGC GGTACCGTGC GCCTGCCGCG CATCATCGGC
GCCGACAATG CTATCGAATG GATCGCATCG GGCAAGGAAA ACTCCGCAGA AGACGCGCTT
AAAGTCGGTG TTGTCGATGC AATAGTGGCT CCCGAGAAGC TTCAGGCCGC AGCGCTTGAC
CTTATCCAGC GCGCTATTTC CGGCGAGTTC GATTACAAGG CCAAGCGTCA ACCAAAGCTG
GACAAGCTCA AACTGAACGC CATCGAGCAG ATGATGGCAT TCGAGACCGC CAAGGGTTTT
GTCGCAGGTC AAGCCGGGCC GAATTACCCG GCGCCGGTCG AAGCCATCAA GACCATCCAG
AAAGCCGCCA TCTTTGGCCG TGACAAGGCA CTGGAAATCG AAGCCGCCGG TTTCGTGAAA
ATGGCCAAGA CTTCGGCCGC GCAGAGCCTG ATCGGCCTGT TCCTGAATGA TCAGGAGCTG
AAAAAGAAAG CCAAGGGCTA CGACGAAGTG GCTCGCGACG TGAAACAGGC CGCCGTGCTG
GGGGCCGGGA TCATGGGCGG CGGTATTGCC TATCAGTCTG CGGTCAAGGG CACGCCGATC
CTGATGAAGG ACATCCGCGA AGAAGCCATT CAACTGGGCC TGAACGAAGC CTCCAAGCTG
CTGGGCGGTC GCCTTGAAAA AGGCCGTCTG ACCGCTGCGA AGATGGCAGA AGCGCTAAAC
GCGATTCGTC CTACGCTGTC CTACGGCGAT TTCGGCAATG TCGACCTGGT GGTTGAAGCG
GTTGTCGAAA ACCCCAAGGT CAAACAGGCC GTACTCGCTG AAGTCGAAGC CAACGTCGGT
GAAAACACCA TTCTGGCTTC CAACACCTCG ACCATTTCCA TCAGCCTGTT GGCGCAAGCG
CTCAAGCGCC CGGAAAACTT CGTCGGCATG CACTTCTTCA ATCCGGTGCA CATGATGCCG
CTGGTGGAAG TGATCCGTGG CGAGAAGTCC AGCGAAGAGG CTGTCGCCAC CACCGTTGCC
TATGCCAAGA AAATGGGCAA GAACCCGATT GTGGTCAACG ACTGCCCGGG CTTTCTGGTC
AATCGCGTGC TGTTCCCGTA CTTCGGCGGT TTCGCCAGAC TGGTCAGCGC GGGCGTGGAT
TTCGTGCGCA TCGACAAGGT CATGGAAAAA TTCGGCTGGC CGATGGGCCC TGCGTACCTG
ATGGACGTTG TCGGCATCGA CACCGGCCAC CACGGCCGTG ACGTGATGGC TGAAGGCTTC
CCCGACCGCA TGAAAGACGA CCGTCGTTCT GCCGTTGACG CGTTGTATGA AGCCAATCGT
CTGGGCCAGA AGAACGGCAA GGGCTTCTAT GTCTACGAGA CCGACAAGAA GGGCAAGCCC
AAGAAGGTCA ACGATCCGGC GGTGCTGGAC GTGCTCAAGC CGATTGTCTA CGAGCAGCGT
GAAGTCAGCG ATGAAGACAT CATCAACTGG ATGATGATCC CGCTGTGCCT GGAAACCGTT
CGCTGCCTGG AAGACGGCAT CGTCGAAACG GCTGCCGAAG CTGACATGGG CCTGATCTAC
GGTATTGGTT TCCCTCCATT CCGTGGCGGT GCGCTGCGCT ACATCGATTC CATCGGTGTT
GCCGAATTCG TTGCCCTGGC CGATCGATAT GCCGAGCTGG GTGCCCTGTA TCAACCGACC
GCAAAGCTGC GTGAGATGGC CGCCAATGGC CAGAGCTTCT TCGGTCAAGC GTCTTCCGAG
GTATGA
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| Protein sequence | MIYEGKAITV KALESGIVEL NFDLKGESVN KFNRLTLNEL RQAVDAVKAD ASVKGVIVTS
GKDVFIVGAD ITEFVDNFKL PEAELVAGNL EANRIFSDFE DLGVPTVVAI NGIALGGGLE
MCLAADYRVI SSSARVGLPE VKLGLYPGFG GTVRLPRIIG ADNAIEWIAS GKENSAEDAL
KVGVVDAIVA PEKLQAAALD LIQRAISGEF DYKAKRQPKL DKLKLNAIEQ MMAFETAKGF
VAGQAGPNYP APVEAIKTIQ KAAIFGRDKA LEIEAAGFVK MAKTSAAQSL IGLFLNDQEL
KKKAKGYDEV ARDVKQAAVL GAGIMGGGIA YQSAVKGTPI LMKDIREEAI QLGLNEASKL
LGGRLEKGRL TAAKMAEALN AIRPTLSYGD FGNVDLVVEA VVENPKVKQA VLAEVEANVG
ENTILASNTS TISISLLAQA LKRPENFVGM HFFNPVHMMP LVEVIRGEKS SEEAVATTVA
YAKKMGKNPI VVNDCPGFLV NRVLFPYFGG FARLVSAGVD FVRIDKVMEK FGWPMGPAYL
MDVVGIDTGH HGRDVMAEGF PDRMKDDRRS AVDALYEANR LGQKNGKGFY VYETDKKGKP
KKVNDPAVLD VLKPIVYEQR EVSDEDIINW MMIPLCLETV RCLEDGIVET AAEADMGLIY
GIGFPPFRGG ALRYIDSIGV AEFVALADRY AELGALYQPT AKLREMAANG QSFFGQASSE
V
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