Gene PSPTO_3516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3516 
SymbolfadA 
ID1185181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3966542 
End bp3967717 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content60% 
IMG OID637394869 
Product3-ketoacyl-CoA thiolase 
Protein accessionNP_793296 
Protein GI28870677 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.245239 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTTA ATCCAAGAGA CGTCGTGATT GTCGACTTCG GTCGCACCCC GATGGGCCGC 
TCCAAGGGCG GTATGCACCG CAATACCCGT GCTGAAGATA TGTCGGCGCA CCTGATCAGC
AAACTGCTCG AGCGCAACAA CAAGGTCGAT CCGGCCGAAG TCGAGGACGT GATCTGGGGC
TGCGTCAACC AGACCCTGGA GCAGGGCTGG AACATCGCGC GCATGGCGTC GTTGCTGACC
CAGATCCCTC ACACTTCCGC CGCGCAGACC GTGAGCCGTC TGTGTGGTTC GTCCATGAGC
GCGCTGCACA CCGCTGCGCA GGCGATCATG ACCAACAATG GCGACGTATT TGTCATCGGT
GGCGTTGAGC ACATGGGCCA CGTCAGCATG ATGCACGGCG TGGACCCCAA CCCGCATATG
TCCCTGCACG CCGCCAAGGC GTCCGGGATG ATGGGCCTGA CCGCTGAAAT GCTCGGCAAG
ATGCATGGCA TTACTCGCGA GCAGCAGGAT GCATTCGGTT TGCGTTCCCA CCAGTTGGCT
CACAAGGCCA CGCTGGAAGG CAAGTTCAAG GACGAGATCA TCCCGATGCA GGGGTACGAC
GAGAACGGCT TTCTCAGGGT CTTCGACTAT GATGAAACCA TTCGTCCGGA CACCACCCTG
GAAAGCCTGG CGGCCTTGAA GCCGGCGTTC AATCCAAAAG GCGGCACCGT GACGGCGGGT
ACTTCTTCGC AGATCACTGA TGGCGCGTCG TGCATGATCG TCATGTCAGC CCAGCGCGCC
CAGGACCTCG GCATCCAGCC TCTGGCGGTG ATTCGCTCAA TGGCCGTGGC CGGTGTAGAC
CCTGCGATCA TGGGCTATGG TCCGGTTCCG GCGACGCAAA AAGCGCTCAA GCGCGCTGGC
CTGAGTATCA GCGATATCGA CTTCTTCGAG CTCAACGAAG CGTTCGCTGC ACAGGCCTTG
CCGGTGCTGA AAGATTTGAA AGTACTCGAC AAGATGAACG AGAAGGTTAA CCTGCACGGC
GGCGCCATCG CTCTGGGCCA TCCATTTGGG TGTTCCGGTG CGCGCATCTC CGGCACCTTG
CTCAATGTCA TGAAGCAGAA TGGCGGCACC TTTGGCGTGT CTACCATGTG TATCGGTCTG
GGTCAGGGCA TCGCGACCGT TTTCGAACGC GTCTGA
 
Protein sequence
MSLNPRDVVI VDFGRTPMGR SKGGMHRNTR AEDMSAHLIS KLLERNNKVD PAEVEDVIWG 
CVNQTLEQGW NIARMASLLT QIPHTSAAQT VSRLCGSSMS ALHTAAQAIM TNNGDVFVIG
GVEHMGHVSM MHGVDPNPHM SLHAAKASGM MGLTAEMLGK MHGITREQQD AFGLRSHQLA
HKATLEGKFK DEIIPMQGYD ENGFLRVFDY DETIRPDTTL ESLAALKPAF NPKGGTVTAG
TSSQITDGAS CMIVMSAQRA QDLGIQPLAV IRSMAVAGVD PAIMGYGPVP ATQKALKRAG
LSISDIDFFE LNEAFAAQAL PVLKDLKVLD KMNEKVNLHG GAIALGHPFG CSGARISGTL
LNVMKQNGGT FGVSTMCIGL GQGIATVFER V