Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3516 |
Symbol | fadA |
ID | 1185181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3966542 |
End bp | 3967717 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394869 |
Product | 3-ketoacyl-CoA thiolase |
Protein accession | NP_793296 |
Protein GI | 28870677 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02445] fatty oxidation complex, beta subunit FadA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.245239 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCCTTA ATCCAAGAGA CGTCGTGATT GTCGACTTCG GTCGCACCCC GATGGGCCGC TCCAAGGGCG GTATGCACCG CAATACCCGT GCTGAAGATA TGTCGGCGCA CCTGATCAGC AAACTGCTCG AGCGCAACAA CAAGGTCGAT CCGGCCGAAG TCGAGGACGT GATCTGGGGC TGCGTCAACC AGACCCTGGA GCAGGGCTGG AACATCGCGC GCATGGCGTC GTTGCTGACC CAGATCCCTC ACACTTCCGC CGCGCAGACC GTGAGCCGTC TGTGTGGTTC GTCCATGAGC GCGCTGCACA CCGCTGCGCA GGCGATCATG ACCAACAATG GCGACGTATT TGTCATCGGT GGCGTTGAGC ACATGGGCCA CGTCAGCATG ATGCACGGCG TGGACCCCAA CCCGCATATG TCCCTGCACG CCGCCAAGGC GTCCGGGATG ATGGGCCTGA CCGCTGAAAT GCTCGGCAAG ATGCATGGCA TTACTCGCGA GCAGCAGGAT GCATTCGGTT TGCGTTCCCA CCAGTTGGCT CACAAGGCCA CGCTGGAAGG CAAGTTCAAG GACGAGATCA TCCCGATGCA GGGGTACGAC GAGAACGGCT TTCTCAGGGT CTTCGACTAT GATGAAACCA TTCGTCCGGA CACCACCCTG GAAAGCCTGG CGGCCTTGAA GCCGGCGTTC AATCCAAAAG GCGGCACCGT GACGGCGGGT ACTTCTTCGC AGATCACTGA TGGCGCGTCG TGCATGATCG TCATGTCAGC CCAGCGCGCC CAGGACCTCG GCATCCAGCC TCTGGCGGTG ATTCGCTCAA TGGCCGTGGC CGGTGTAGAC CCTGCGATCA TGGGCTATGG TCCGGTTCCG GCGACGCAAA AAGCGCTCAA GCGCGCTGGC CTGAGTATCA GCGATATCGA CTTCTTCGAG CTCAACGAAG CGTTCGCTGC ACAGGCCTTG CCGGTGCTGA AAGATTTGAA AGTACTCGAC AAGATGAACG AGAAGGTTAA CCTGCACGGC GGCGCCATCG CTCTGGGCCA TCCATTTGGG TGTTCCGGTG CGCGCATCTC CGGCACCTTG CTCAATGTCA TGAAGCAGAA TGGCGGCACC TTTGGCGTGT CTACCATGTG TATCGGTCTG GGTCAGGGCA TCGCGACCGT TTTCGAACGC GTCTGA
|
Protein sequence | MSLNPRDVVI VDFGRTPMGR SKGGMHRNTR AEDMSAHLIS KLLERNNKVD PAEVEDVIWG CVNQTLEQGW NIARMASLLT QIPHTSAAQT VSRLCGSSMS ALHTAAQAIM TNNGDVFVIG GVEHMGHVSM MHGVDPNPHM SLHAAKASGM MGLTAEMLGK MHGITREQQD AFGLRSHQLA HKATLEGKFK DEIIPMQGYD ENGFLRVFDY DETIRPDTTL ESLAALKPAF NPKGGTVTAG TSSQITDGAS CMIVMSAQRA QDLGIQPLAV IRSMAVAGVD PAIMGYGPVP ATQKALKRAG LSISDIDFFE LNEAFAAQAL PVLKDLKVLD KMNEKVNLHG GAIALGHPFG CSGARISGTL LNVMKQNGGT FGVSTMCIGL GQGIATVFER V
|
| |