| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3489 |
|---|
| Symbol | |
|---|
| ID | 1185154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3937795 |
|---|
| End bp | 3939372 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637394842 |
|---|
| Product | sugar ABC transporter, ATP-binding protein |
|---|
| Protein accession | NP_793269 |
|---|
| Protein GI | 28870650 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGTT CCGCTACTGC CAGCCCTCCC GCAAAACCCG ATCTGCCGTC CAGTGATGGT
GCTGGCCTCA CGCCAGATGC TCAGTGCCCC TATCTGCTGG AAATCAGCCA TATCAGCAAA
GGCTTCCCTG GCGTTATCGC GCTCGACGAT GTCCAGCTGC GCCTGCGTCC CGGCAGTGTG
CTGGCGCTGA TGGGCGAGAA CGGGGCAGGG AAGTCAACGT TGATGAAAAT CATCGCCGGG
ATCTACCAGC CCGATACCGG CGAAATTCGC TTGCGCGGCA AGCCGATCAG CTTTACCACC
CCGCTTTCAG CCCTTCAGGC GGGTATCGCC ATGATCCATC AGGAACTGAA CCTGATGCCC
TTCATGAGCA TCGCCGAGAA TATCTGGATC GGCCGCGAGC AGCTCAATGG CCTGCACATG
GTCGACCACC GGGAAATGCA CCGCTGTACG GCGCAATTGC TGGAGCGTCT GCGCATCAAG
CTTGATCCCG AAGAGCTGGT GGGCAACCTG AGCATTGCCG AACGGCAGAT GGTGGAGATC
GCCAAAGCCG TTTCCTACGA TTCGGACGTG CTGATCATGG ACGAGCCCAC CTCGGCCATT
ACCGAGACTG AAGTGGAGCA CCTGTTTTCA ATCATTGCCG ACCTGCGCTC GCAGGGCAAA
GGCATCATCT ACATCACCCA CAAGATGAAT GAAGTGTTCA AGATCGCCGA CGAAGTGGCG
GTGTTTCGTG ATGGCACCTA CATTGGCCTG CAGCGCGCCG AAAGCATGGA TGGCGACAGC
CTGATCTCGA TGATGGTCGG TCGCGAGTTG ACCCAATTAT TCCCGCAGCG CGAAAAGCCT
GCGGGCGATG TCCTGCTTTC TGTCAGTGAC CTGAGCCTGA AAGGCATTTT CCAGCAGGTC
TCCTTCGACC TGCGGGCCGG TGAGGTTCTG GGCATTGCCG GGCTGATGGG TTCGGGGCGC
ACCAATGTGG CCGAGACCCT GTTCGGGATC ACTCCCAGCG ACAGTGGCGA GATCCGTTTC
GATGGCAAGA CGGTACGCAT TGGCGACCCG CATCAGGCCA TCGAACTGGG GTTTGCGCTG
CTGACCGAAG ACCGCAAGCT GACCGGCCTG TTTCCGTGCC TGTCGGTCAT GGAAAACATG
GAAATGGCCG TCTTGGCCAA TTATGCGGGT AGTGGCTTCG TGCAGCAGAA AGCATTGCGG
GCGCTGTGCG AAGACATGTG CAAGAAGCTG CGGGTGAAAA CTCCTTCGCT GGAGCAGTGC
ATCGACACGC TGTCCGGTGG CAACCAGCAG AAAGCCCTGT TGGCGCGCTG GTTGATGACC
AATCCCAGGG TCTTGATTCT CGACGAGCCG ACGCGCGGCA TCGACGTCGG TGCCAAGGCG
GAAATTTATC GGCTGATCTC GCTGCTGGCC AGCGAAGGCA TGGCCGTCAT CATGATCTCT
TCGGAGCTGC CGGAAGTGCT GGGCATGAGC GATCGGGTCA TGGTCATGCA CGAAGGCGAA
ATGATGGGGA TTCTCGACCG TAGCGAAGCG ACCCAGGAAA AAGTCATGCA TCTGGCCTCC
GGCCACCGGG TTCATTGA
|
|---|
| Protein sequence | MSGSATASPP AKPDLPSSDG AGLTPDAQCP YLLEISHISK GFPGVIALDD VQLRLRPGSV
LALMGENGAG KSTLMKIIAG IYQPDTGEIR LRGKPISFTT PLSALQAGIA MIHQELNLMP
FMSIAENIWI GREQLNGLHM VDHREMHRCT AQLLERLRIK LDPEELVGNL SIAERQMVEI
AKAVSYDSDV LIMDEPTSAI TETEVEHLFS IIADLRSQGK GIIYITHKMN EVFKIADEVA
VFRDGTYIGL QRAESMDGDS LISMMVGREL TQLFPQREKP AGDVLLSVSD LSLKGIFQQV
SFDLRAGEVL GIAGLMGSGR TNVAETLFGI TPSDSGEIRF DGKTVRIGDP HQAIELGFAL
LTEDRKLTGL FPCLSVMENM EMAVLANYAG SGFVQQKALR ALCEDMCKKL RVKTPSLEQC
IDTLSGGNQQ KALLARWLMT NPRVLILDEP TRGIDVGAKA EIYRLISLLA SEGMAVIMIS
SELPEVLGMS DRVMVMHEGE MMGILDRSEA TQEKVMHLAS GHRVH
|
|---|
| |