Gene PSPTO_3444 details

Gene Information

• Locus tag: PSPTO_3444
• ID: 1185109
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3886710
• End bp: 3887222
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637394797
• Product: transcriptional activator RfaH
• Protein accession: NP_793224
• Protein GI: 28870605
• COG category: [K] Transcription
• COG ID: [COG0250] Transcription antiterminator
• TIGRFAM ID: [TIGR01955] transcriptional activator RfaH

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACCTCT CCGACCAGGA TGCTCGCTGG TATCTGATCC AGACCAAACC GCGCCAGGAA 
GCCCGTGCCG AAGAGCATTT GCGACGCCAG GACTTCGAAT GTTTCCGCCC CCTGCGGGCC 
GCGGCAAAAA AAATCGCTGC CAAGGCCCAG GTCGAAGAGG CGCTGTTCCC CGGCTATCTG 
TTCATTCACA TGGATCAGGT GCACGACAAC TGGTATCCGA TCCGCTCCAC CCGTGGCGTT 
TCACGCATCG TGACCTTTGG CGGTCATCCG GTGCCGGTTC GCGACCACCT GATCGAGCAG 
ATTCGCCAAC GCCTCTGCAC GCCCGCGCCC GCCCTGCGTT TCACTCAGGG AGATCAGGTC 
ATGATTACCA CCGGCAGTTG GTGTGACGTG GAGGCCATTT TCCTGACCAC CGACGGCACC 
GAGCGCGCCG TGATTCTGCT CAACATGTTG CAACGCCAGC AGAAAGTGGT GCTGCCCATC 
AGCAGCCTGT CGCGCATCGA GGCCACTGCG TAA 

 

Protein sequence

MYLSDQDARW YLIQTKPRQE ARAEEHLRRQ DFECFRPLRA AAKKIAAKAQ VEEALFPGYL 
FIHMDQVHDN WYPIRSTRGV SRIVTFGGHP VPVRDHLIEQ IRQRLCTPAP ALRFTQGDQV 
MITTGSWCDV EAIFLTTDGT ERAVILLNML QRQQKVVLPI SSLSRIEATA