Gene PSPTO_3330 details

Gene Information

• Locus tag: PSPTO_3330
• Symbol: tliD
• ID: 1184988
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3766614
• End bp: 3768413
• Gene Length: 1800 bp
• Protein Length: 599 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637394680
• Product: ABC transporter, ATP-binding protein
• Protein accession: NP_793113
• Protein GI: 28870494
• COG category: [R] General function prediction only
• COG ID: [COG4618] ABC-type protease/lipase transport system, ATPase and permease components
• TIGRFAM ID: [TIGR01842] type I secretion system ABC transporter, PrtD family

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.355213
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGCGT TGCCCCATAG CGCCCAGCCA CCGCTCTACA AAGCGCTGGC AGACTACAAG 
AGCGCGTTGA TCGGTGTGGG TTGTTTTACC GCGCTGATCA ACGTGTTGAT GCTCGCTCCA 
TCGATTTACA TGTTGCAGGT CTATGACCGC GTATTGACCT CACAGAACCA GACCACACTG 
GCCATGCTGA CCCTGATGGT GGTCGGGTTC TTCGCCTTTA TCGGCGTGCT GGAGATGATT 
CGCAGCTTTG TGGTGATCCG CATCGGCAGC GAGCTGGAGC GACGTTTCAA TTTGCGCGTT 
TATCAAGCCG CGTTCGAGAG CAACCTGCAT GCCGGGCAGC GCCAGGCCGG ACAGGCGCTG 
GGCGACCTGT CCTTCATCCG GCAGTTTCTC ACCGGCCCTG CGTTGTTCGC GTTCTTCGAC 
GCCCCCTGGT TTCCCGTCTA CCTGGCGGTC ATTTTTCTTT TCGACCCCTG GCTTGGCGTG 
CTGGCCAGTG TTGGTACGGT GTTGCTGGTA GGGCTGGCCT GTCTGAATGA GTGGCTGACC 
CGCAAACCGC TGGCCGAGGC CAGTGGCTAT TCGCAGCAGT CGTCGCAACT GGCGACCCGT 
CATCTGCAGC AGGCCGAGGC CATTCAGGCG ATGGGCATGC TCGAAGCGTT GCGTCGTCGC 
TGGTTCAATG TGCACGGGCG CTTTCTGGCC CTGCAGAACC GCGCCAGCGA CACCGGAGCG 
GTGATCAGTT CGATCAGCAA GGCGCTGCGC CTGTGCCTGC AATCACTGGT GTTGGGGCTG 
GGAGCGTTGC TGGTGATTCG TGGCGACATG ACCGCAGGCA TGATGATCGC CGGCTCGATC 
CTGATGGGGC GGGTACTCAG CCCTATCGAT CAACTGATTG CAGTCTGGAA ACAATGGAGT 
TCTGCACGTC TGGCTTATGG GCGTCTGGAC CATTTGCTCA AGACCTACGC CGAGCCCGCG 
CCGCGCATGG CGCTGCCCAC GCCGCGTGGT CAGATCAGTG CGGAGCAGGT CAGCGCTGCG 
CCTCCGGGCC GAAACTCGCC TACGGTTCAG CAGGTGAGCT TCCAGTTGCA GGCAGGGGAG 
GTGCTCGGCG TGCTGGGCGC ATCGGGTTCC GGCAAATCGA CCCTGGCCCG GGTGCTGGTC 
GGGGTATGGC CCGCACTGGG CGGAACGGTG CGGCTGGACG GTGCCGACAT GCACCGGCTG 
GACCGGGAGG CGCTGGGCCC CCATATTGGC TATTTGCCGC AAGACATCGA ATTGTTTGGC 
GGCAGCGTGG CAGAAAACAT CGCGCGCTTT CGCGAGGGCG ACGCGAGCGC GGTGGTGGCG 
GCTGCGCAAC TGGCGGGTGT GCATGAACTG ATCCTGCGCC TGCCGCAAGG TTATGACACG 
CGACTGGGCG ATGATGGCGG CGGTTTGTCC GGCGGTCAGA AACAGCGCGT TGCGTTGGCC 
CGCGCCTTGT ACGGCGACCC CAAACTGGTG GTGCTCGATG AGCCCAACTC CAATCTGGAC 
GCCGCCGGCG AAGCGGCCCT GACCCAGGCA ATGGGTGAAC TCAAGGCGCG TGGATGCACC 
GTTGTGCTCG TCACTCACCG CACCCAGTCC TTGAGTCAGA CCGATTGCCT GCTGGTGCTG 
AGCGAAGGTC GCATGCAGGC ATTCGGCCCT ACGGCTCAGG TGCTGCAAGC CTTGTCCGGC 
CAGGCATCTT CCGGGCAAGC GTCCACCACG CAAGCAGCAC AACCGCAACC CCGCTCGGTA 
CCTGCCGGGC TCTCCATGAG CCGTCAGTAC GGCAACCAGA ACAGGCAGTC CGACGTATGA 

 

Protein sequence

MSALPHSAQP PLYKALADYK SALIGVGCFT ALINVLMLAP SIYMLQVYDR VLTSQNQTTL 
AMLTLMVVGF FAFIGVLEMI RSFVVIRIGS ELERRFNLRV YQAAFESNLH AGQRQAGQAL 
GDLSFIRQFL TGPALFAFFD APWFPVYLAV IFLFDPWLGV LASVGTVLLV GLACLNEWLT 
RKPLAEASGY SQQSSQLATR HLQQAEAIQA MGMLEALRRR WFNVHGRFLA LQNRASDTGA 
VISSISKALR LCLQSLVLGL GALLVIRGDM TAGMMIAGSI LMGRVLSPID QLIAVWKQWS 
SARLAYGRLD HLLKTYAEPA PRMALPTPRG QISAEQVSAA PPGRNSPTVQ QVSFQLQAGE 
VLGVLGASGS GKSTLARVLV GVWPALGGTV RLDGADMHRL DREALGPHIG YLPQDIELFG 
GSVAENIARF REGDASAVVA AAQLAGVHEL ILRLPQGYDT RLGDDGGGLS GGQKQRVALA 
RALYGDPKLV VLDEPNSNLD AAGEAALTQA MGELKARGCT VVLVTHRTQS LSQTDCLLVL 
SEGRMQAFGP TAQVLQALSG QASSGQASTT QAAQPQPRSV PAGLSMSRQY GNQNRQSDV