Gene PSPTO_3328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3328 
SymboltliF 
ID1184986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3763908 
End bp3765278 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content60% 
IMG OID637394678 
ProductABC transporter, permease protein 
Protein accessionNP_793111 
Protein GI28870492 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.262756 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCGTT ATCCTCTGAA AGCCGCTTTG CTGACGGCCA TCCTGCTGGG TACTGCGCCG 
TTGAGTCATG CGATGGGACC GTTTCAGGTC TATGAGCTGG CGCTACGCAA TGACCCGACC
TACCTCGGCG CACTCAAGGA ACGCGATGCG GGCCTTGAGA ACCGGATCAT TGGTCGCGCC
GGCCTGTTGC CTCGCGTGTC GTACAACTAC AACAAAGGGC GCAACGATTC AAAAGCCACC
CTTAAAGGTG GCCGCGAAGA CACCACGGAT CATCGCCACT ACAACAGCTT TGGTTCAAGC
CTGACGATCC AGCAGCCGTT GATTGATTAC GAGGCCTACG CCAATTACCG CAAGGGCCTG
GCTCAGGCAC TGTTTGCCGA CGAGACCTTT CGCAGCAAGA GTCAGGAATT GCTGGTGCGG
GTGCTGACCC TTTACACCCA GGCACTGTTT GCTCAGGACC AGATCAGCAT CGCGCGCGCC
AAACAGCAGG CGTTCGAGCG CCAGTTTGCG CAGAACCGGC AGATGTTTCA GCAAGGCGAG
GGCACCCGTA CCGACATTCT GGAAGCTGAA TCGCGCAACG AGCTGGCGAT TGCCGAGCAG
ATCGAAGCCA GCGACGAACA GGACGCTGCC TTGCGTGAAC TGGCAGCGTT GCTGGGCGAG
CCGGGTATCG ATGTTTCGCA ACTGGACCCT TTGAAGGACA GTTTTCAGGC GTTGGTACTC
GCACCTTCAA GTTTCACCGA GTGGCATGCG CTGGCCGCGG CCAATAGCCC GATACTTGCG
TCGCAGCGTC AGGCAGTGGA AGTGGCGCGC TATGACGTGG AGCGCAATCG CGCCGGTCAT
CTGCCGACGG TGAATGCCTT CGCGAGCATT CGTCAGAACG AGTCGGACAG CGGCAACACC
TACAATCAGC GTTACGACAC TAACACCGTG GGCATCGAGG TCAGTCTGCC GTTGTACGCC
GGTGGCGGCA CCAGTGCTTC GGTGCGTCAG GCCAACAGCA AGCGTGAACA GGCTGAATAC
GAGCTGGAAG GCAAGACCCG TGAAACCCTG ATCGAGCTGC GTCGCCAGTT CAACGCCTGC
GCGTCCGGGG TGAGCAAGCT GCGCGCTTAT CAGAAAGCGT TGGTGTCGGC GCAGGCGCTG
GTCGAATCGA CACGCCAGAG CATTCTGGGT GGCGAGCGCA TCAGCCTGGA TGCGCTCAAC
GCCGAGCAGC AGCTCTACAG CACCCGGCGC GATCTGGCGA AAGCCCGTTA CGATTATTTG
ATGGCGTGGA TCAAACTGCA TTACTACGCC GGTACGTTGC GCGACACCGA TCTGGCGCGC
ATCGACGAGG CCTTCGTGCT GGCGCGCGAT GGCCGTGATC GGCAGCGGTA A
 
Protein sequence
MMRYPLKAAL LTAILLGTAP LSHAMGPFQV YELALRNDPT YLGALKERDA GLENRIIGRA 
GLLPRVSYNY NKGRNDSKAT LKGGREDTTD HRHYNSFGSS LTIQQPLIDY EAYANYRKGL
AQALFADETF RSKSQELLVR VLTLYTQALF AQDQISIARA KQQAFERQFA QNRQMFQQGE
GTRTDILEAE SRNELAIAEQ IEASDEQDAA LRELAALLGE PGIDVSQLDP LKDSFQALVL
APSSFTEWHA LAAANSPILA SQRQAVEVAR YDVERNRAGH LPTVNAFASI RQNESDSGNT
YNQRYDTNTV GIEVSLPLYA GGGTSASVRQ ANSKREQAEY ELEGKTRETL IELRRQFNAC
ASGVSKLRAY QKALVSAQAL VESTRQSILG GERISLDALN AEQQLYSTRR DLAKARYDYL
MAWIKLHYYA GTLRDTDLAR IDEAFVLARD GRDRQR