| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3307 |
|---|
| Symbol | gspD |
|---|
| ID | 1184965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3740495 |
|---|
| End bp | 3742786 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394657 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | NP_793090 |
|---|
| Protein GI | 28870471 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.335208 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTTTGCC TGGCCACCGC CGTCGCCCTT GGCGGCTGCG CGTCACAGCC AGACACACTC
GACCCCGACA ATGGCATGCT GCAGGAAGCG CTCCAGGGAA CCGGTTCACA ACGCCCGCCG
GTAGACCCGC GCAGCGAACG ACCGCCCGTC GAGCCTCCTT CACAGCAGAC GGCGGCCTCG
CCGCAGCGCC AGATCATCAA GGGCAATCAG CCTTTCATCC GCCAGCCCGC AGCGGCTCCG
GCAGCGCGCC CGGCGGAGGC TGGCGACATT GTCTTCAACT TCACCAATCA GCCGATTCAG
GCGGTGATCA ACAGCATCAT GGGCGACCTG CTGCACGAGA ACTACAGCAT TGCCCAAGGC
GTGAAAGGCG ATGTGAGCTT CTCAACCTCC AAGCCGGTCA ACAAGCAGCA GGCGCTGTCG
ATTCTCGAGA CGCTGTTGTC GTGGACCGAC AACGCGATGA TCAAGCAGGG CAATCGCTAC
GTGATCCTGC CCTCGAATCA GGCTGTGGCC GGCAAGCTGG TACCGGAAAT GCCGGTGGCG
CAACCGGCGG CGGGCATGTC GGCGCGGCTG TTTCCGCTGC GTTACATCTC GGCCACTGAA
ATGCAGAAGC TGCTCAAGCC GTTCGCGCGG GAAAACGCGT TCCTGCTGGT CGATCCGGCG
CGTAACGTAC TGAGCCTGGC GGGCACGCCC GAAGAACTGG CCAACTATCA GGACACTATC
GACACGTTTG ATGTGGACTG GCTCAAAGGC ATGTCGGTCG GCGTATTTGG TCTGCAACGT
GCCTCGGTTG GCGAACTGAT GCCTGAGCTG CAGAAAATCT TCGGCCCGCA AAGCGGCATG
CCGCTGGCGG GCATGGTGCG TTTTCTGCCG ATCGAGCGGA CCAATTCGGT GGTGGCGATT
TCCTCGCAGC CCGAGTACCT GCGTGAAGTC GGCGAATGGA TTCACACCAT CGACGAAGGC
GGCGGCAACG AGCCGCAGAT GTACGTGTAC GACGTACGCA ACATGAAGGC CACCGACCTC
GCCAAATACC TGCGACAGAT CTATGGCACA GGTGCTATCA AGGATGATTC GCCCGCCAAG
GTTGCGCCGG GCCTGCGCAC CACCACGCTG TCGTCACTCA ATTCCAGCGG CGGCAGTGGC
TCTGGCGGCA TGAGCAGCTC CAGTGGCCTG GGCGGCAATA GCAGCGGCAT GAGCAACGGC
ATGAGCAACG GCGGTGGCTT TGGCAACAGC CAGGGCATGA ACAACAGCCA GAACAGCGCC
GACAGCGAAT CCGAAGGCGA CGATCAGAGC GGCAGCGAAG CGGATTCTTC CAGTCAGGAC
GACAGCGGGT CGAACGCCGG CAGCAAGTCG CTGGATGCCA GCACCCGCAT CACCGCACAG
AAGAGCAGCA ACCAGTTGCT GGTGCGCACG CGTCCGGCGC AGTGGAAAGA GATCGAATCA
GCGATCAAGC GCCTCGACAA TCCGCCGCTG CAAGTGCAGA TAGAGACGCG AATTCTGGAG
GTCAAACTCA CCGGCGAACT GGACATGGGG GTGCAATGGT ACTTGGGCCG TCTGGCCGGT
AACTCGGGCA CCACCGGCAA TGTCACCAAC ACCCCTGGCA GCCAGGGTTC GCTTGGCACT
GGCGGCGCAG CGCTGGCCGC CACCGACTCG TTTTTCTATT CGTTTGTCAG CAATAATCTG
CAGGTCGCTC TGCGTGCACT GGAAACCAAC GGTCGTACTC AGGTGCTGTC GGCACCGTCG
CTGGTGGTCA TGAACAACCA GCAGGCGCAG ATTCAGGTGG GTGACAACAT CCCTATCAGC
CAGACCTCAA TCAACACCAA CACGGCTACC AACACCACGT TGAGCAGCGT CGAATACGTG
CAGACCGGTG TCATTCTCGA CGTCGTGCCG CGCATCAATC CGGGCGGCCT GGTGTACATG
GATATTCAGC AACAGGTGAG CGATGCTGAC ACCGGCACTG CCTCCACTGA CCTGAACGGC
AATCCGCGTA TTTCGACCCG TTCAGTGTCG ACGCAAGTCG CCGCGCAGAG TGGTCAGACG
GTGCTGTTGG GCGGGTTGAT CAAGCAGGAT AATTCCGAGA CGGTCAGCGC GGTGCCTTAT
CTGGGGCGTA TTCCAGGCTT GAAATGGTTG TTCGGCAACT CCAGCAAATC CAAGGACCGC
ACCGAGCTGA TCGTGCTGAT CACGCCGCGA GTCATCACCA GCAGCAGTCA GGCGCGTCAG
GTGACCGATG ATTACCGTCA ACAGATGCAG TTGCTCAAAC CCGAGGTTTC ACGGACCAGC
ATGCAGAACT GA
|
|---|
| Protein sequence | MLCLATAVAL GGCASQPDTL DPDNGMLQEA LQGTGSQRPP VDPRSERPPV EPPSQQTAAS
PQRQIIKGNQ PFIRQPAAAP AARPAEAGDI VFNFTNQPIQ AVINSIMGDL LHENYSIAQG
VKGDVSFSTS KPVNKQQALS ILETLLSWTD NAMIKQGNRY VILPSNQAVA GKLVPEMPVA
QPAAGMSARL FPLRYISATE MQKLLKPFAR ENAFLLVDPA RNVLSLAGTP EELANYQDTI
DTFDVDWLKG MSVGVFGLQR ASVGELMPEL QKIFGPQSGM PLAGMVRFLP IERTNSVVAI
SSQPEYLREV GEWIHTIDEG GGNEPQMYVY DVRNMKATDL AKYLRQIYGT GAIKDDSPAK
VAPGLRTTTL SSLNSSGGSG SGGMSSSSGL GGNSSGMSNG MSNGGGFGNS QGMNNSQNSA
DSESEGDDQS GSEADSSSQD DSGSNAGSKS LDASTRITAQ KSSNQLLVRT RPAQWKEIES
AIKRLDNPPL QVQIETRILE VKLTGELDMG VQWYLGRLAG NSGTTGNVTN TPGSQGSLGT
GGAALAATDS FFYSFVSNNL QVALRALETN GRTQVLSAPS LVVMNNQQAQ IQVGDNIPIS
QTSINTNTAT NTTLSSVEYV QTGVILDVVP RINPGGLVYM DIQQQVSDAD TGTASTDLNG
NPRISTRSVS TQVAAQSGQT VLLGGLIKQD NSETVSAVPY LGRIPGLKWL FGNSSKSKDR
TELIVLITPR VITSSSQARQ VTDDYRQQMQ LLKPEVSRTS MQN
|
|---|
| |