| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3290 |
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| Symbol | |
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| ID | 1184948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3717304 |
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| End bp | 3718629 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637394640 |
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| Product | outer membrane porin, OprD family |
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| Protein accession | NP_793073 |
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| Protein GI | 28870454 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.609631 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCAAC GCAAAAGACT TTCCCTCGCC TTATGGTCGA CCCTCGCCGG AATCACACCT
TTTGCCGCCT TCGCAGAAGA GCAGAAAGAA GGGTTCGTCG AAGGCAGCTC GCTCAACATT
CTCAATCGAA ACTTCTACAT GAACCGTGAC CATCGTCATG GTGAGTCAAG CCCGACCGGC
AGCGGCTACT CTGAAGCCTG GGCGCACGGC ATCATGGGGC GCTTTGAATC GGGCTTCACC
CAAGGCACCC TCGGCGTAGG TCTGGATGCG TTCGCGATGG TCGGTATCAA GCTGGATACG
GGCGACGGCC GAAACGGCCT TCAAACACCC TTCTCGGTGA TGCCCGTCAA TTCGGATGGC
AACGCCCGCA ATGAATACAC CAAAGTCGGC GGCGCGCTGA AAGCCAGAGC GTTCGACACT
GTCGTCAGAG CAGGCGATGT CTTCCCGACA ACCCCCGTTG TCGCTTTCGG CGATAGCCGT
CTGCTGCCGG AAAGCTTTCG CGGCGTGACC GCTATCAACG ACAGTTTCAA GGGCCTGACC
TTGCAAGGCG GTCGCCTAAA CGGGATGAGT CAGCCTGCTT CAAGCGACAT GAAAGAAGGC
TTTTCCACGT TCTATGCCGG TCCGGTCGAC TCACCCTGGC TCGCCTATTT CGGCGGTGAC
TACAAAGCCA CTAACCGGCT GAATCTGTCT CTATACACCA GCCGACTGAA AGATGCGTGG
GACCAGAAAT ACGGGGCTGT GTCCTACGTG CTGCCGATCA ACGACGACCT GTCGCTGACC
AGCAGCCTGA ATTACTACAA CGCAACCGAC GAAGGCAAAC GGCTGCTCGG CGAGTTCGAC
AACGACATAT GGAGCGCCAG TGTCGACCTG AAATACGGCG CACACAGCCT GGCGCTTTCC
CATCAGCGCA ACCAGGGCGA TGACGACTTC GACTACCTGA GATTGTCCGA CTCGATTTAT
CTGACCAACT CCCTCCAGTA CAGCGACTTC AACTCGCCGA AAGAACGCTC GTGGATGCTC
ACCTATAACC TGGACATGAC CCCCTACGGC GTGCCCGGTC TTACGTTCAT GACCCGCTAC
GGCAAAGGTA CCGACGCTGA CTATACCAAC GCCAACAACA CCTACATGCG CCGTGACGCA
CAAGGCAACC CGCTGACCGA CCAGAAACGC TGGGAGCGCA ACATCGAAGC CAGGTACACC
TTTCAGACCG GAACCCTGAA GGACTTGTCA GTACGCGTCC GCCAGGCCAC GACCCGAGCG
ACCGAGTTCG AGCAGAACCT GGATGAAGTG CGCGTTATCG TGGAGTACCC GTTGAGTGTG
TTGTGA
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| Protein sequence | MTQRKRLSLA LWSTLAGITP FAAFAEEQKE GFVEGSSLNI LNRNFYMNRD HRHGESSPTG
SGYSEAWAHG IMGRFESGFT QGTLGVGLDA FAMVGIKLDT GDGRNGLQTP FSVMPVNSDG
NARNEYTKVG GALKARAFDT VVRAGDVFPT TPVVAFGDSR LLPESFRGVT AINDSFKGLT
LQGGRLNGMS QPASSDMKEG FSTFYAGPVD SPWLAYFGGD YKATNRLNLS LYTSRLKDAW
DQKYGAVSYV LPINDDLSLT SSLNYYNATD EGKRLLGEFD NDIWSASVDL KYGAHSLALS
HQRNQGDDDF DYLRLSDSIY LTNSLQYSDF NSPKERSWML TYNLDMTPYG VPGLTFMTRY
GKGTDADYTN ANNTYMRRDA QGNPLTDQKR WERNIEARYT FQTGTLKDLS VRVRQATTRA
TEFEQNLDEV RVIVEYPLSV L
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