| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3230 |
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| Symbol | |
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| ID | 1184887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3648541 |
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| End bp | 3650250 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394581 |
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| Product | hemolysin activator protein, HlyB family |
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| Protein accession | NP_793015 |
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| Protein GI | 28870396 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTATCTCC ATGCTCTCAA AACGGCGCTG CTGCTCTCGC TCGCCCTCGT GGCCGCCCCT
GCATTTGCGG CTACCGCTCC GGCTGATACA CCCGGGGTGC AAGACCTTAT CCGTGACCGT
CAGGACCGTC TGCTGGAAGA GCAGCGTCGC CGCCTTGACG AACTCAAGGA GTTGCCCGGC
AAGCAGGCCA CGCCCGTGGC GCCCGCGACG CCTGAGGACA CACGCTGTTT CACTATCAGT
CGTATCGAGC TCAAAGGTGC CGACTCCTTG TCGCCTGCCG AACGCGACGC GTTGATCAAG
CCTTTTCAGA ACAAATGCCT TGGCGTGGCG CAACTCAACG ACCTTCTCAA AACCATCACC
GATCACTACC TCGACAAGGG CCTGATAACC ACTCGCGCCT ACCTGCCGCA GCAGGACCTG
TCGACGGGCG ATCTGCAAGT GCTGGTCATC GAAGGCAAGC TGGAAAAACT GCACGGCGCG
GCTGACAGTG GCCTGTCGGA TCGCCAACTG GCCATGACCT TTCCCGGTCA GGAAGGCCAG
ATCGTCAACC TGCGCGAAAT CGAGCAGATG GTCGATCAGC TCAATCGTCT GCCGTCCAGT
CAGGCACAGA TGGAACTGAC GCCCGGCAAA GAAGTGGGCG GCAGCGATGT GGTGGTCAAA
AGCACGCCGC AAAAGCCGTG GCGGGCCAAT CTGTCGCGTA CCAACGAGGG GCAGCGCAGT
ACCGGTGAGC AGCAATGGAA TGCCGGGCTT GAGTGGGACA ATCCGCTGGG TCTGGCGGAT
CAGTTCAGCC TGCGTGGCGG TCACGATGCG ATCAGCGATC GCCAGAAAGC CTCTCGCAAT
GCCTCGCTTT CCTACAGCCT GCCGTGGGGC TGGTGGACGT TCAGCTACCT GTACAGCACC
AGCGAATACC GTTCGGTGGC GCAGTCATCC AACATCAACT TCAAGCAGGA CGGCGACAGC
CAGAACCATC AGTTCAAGGC CGAGCGCGTC GTGTACCGAG ATGCCCTGAG CAAGACCTCG
CTCAATGCCG GGCTGGCGTA CTTGCGCACC AACAATTATG TCGAAGATAG CAAACTGGCG
GTCAGCAGCA ACCGTATCAC CGAAGCTCAG TTCGGCATCA ACCATGGTCG GCGGGTGGGC
TCGGCGTTCG TCAACATCGA CTTGGGCATG CAGCAGGGCA TCGGTGCTCT GGATGCGCAG
GGCAACCACA ACCCCGGGCC AGGCCAGCCC GATGCACGCT ATCGCAAATA CACCGGCACT
ATCAGCTACC TGCATCCGTT TCAGCTGTGG GGTGAAAACC TGAGTTTCAC CAGCCTGGCC
ACTGGGCAGC GTAGCGAGGA TGTGTTGTTC AGCCCGCAGC GCCAGAGCCT GGGCGGATCT
TCATCAGTGC GTGGCTACAA GGATGAGTTT CTGTCCGGCG ACAGCGGCGG CTATTGGCGC
AACGAAATAC GCCTGACCCG CCCGGTGACG TTCGACTGGC TGCGCCCGTT GTTTGCCGAA
TATGGCGCGG CGGCTGGTTA CGACCAGGGC GTGATCCGCA ATGACCGTTA CAACGGCGAC
CAGCATGGTC GCTTGTCCAG CAACTCGTTC GAGCTGTTTA CCCGTGGCCA GCACGTTGCC
GCCTCGGTGA CCTTCGCTCG CTCCCTGGAA CGTCCCGATG TGATCGAGCG CGAAGCGCCG
GTCTATTTCC GTGTGGACTT CTTCCTTTAA
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| Protein sequence | MYLHALKTAL LLSLALVAAP AFAATAPADT PGVQDLIRDR QDRLLEEQRR RLDELKELPG
KQATPVAPAT PEDTRCFTIS RIELKGADSL SPAERDALIK PFQNKCLGVA QLNDLLKTIT
DHYLDKGLIT TRAYLPQQDL STGDLQVLVI EGKLEKLHGA ADSGLSDRQL AMTFPGQEGQ
IVNLREIEQM VDQLNRLPSS QAQMELTPGK EVGGSDVVVK STPQKPWRAN LSRTNEGQRS
TGEQQWNAGL EWDNPLGLAD QFSLRGGHDA ISDRQKASRN ASLSYSLPWG WWTFSYLYST
SEYRSVAQSS NINFKQDGDS QNHQFKAERV VYRDALSKTS LNAGLAYLRT NNYVEDSKLA
VSSNRITEAQ FGINHGRRVG SAFVNIDLGM QQGIGALDAQ GNHNPGPGQP DARYRKYTGT
ISYLHPFQLW GENLSFTSLA TGQRSEDVLF SPQRQSLGGS SSVRGYKDEF LSGDSGGYWR
NEIRLTRPVT FDWLRPLFAE YGAAAGYDQG VIRNDRYNGD QHGRLSSNSF ELFTRGQHVA
ASVTFARSLE RPDVIEREAP VYFRVDFFL
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