Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3225 |
Symbol | |
ID | 1184882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3626411 |
End bp | 3627220 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394576 |
Product | ISPsy4, transposition helper protein |
Protein accession | NP_793010 |
Protein GI | 28870391 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1484] DNA replication protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00938953 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCTTC AACATGCTCG CCTGACAGAA CTATGCAAGG GGCTAAAGCT TGAGCGCGTC GGGGTGGACT GGCCGCACCT GGCCCAACAA GCAGCAAGCG GCGAAGACAG CTTTGCCGAC TTCCTCGAAA AGCTGCTGGC TGCCGAGACC GATGCCCGAA GTGAACGCTC TCGACAGGCC CTGCTGAAAA CTGCCGCGCT GCCCGCTGTG AAAACGCTGG AGCAATACGA CTTCGCGTTT GCCACCGGCG TCCCCCGGGC ACAGCTCCAG GAGCTGGCAG CACTGAGTTT TGTTGGACGT GCCGAGAACA TCGTGTTCCT GGGGCCTAGT GGTGTAGGCA AGAGCCACCT GGCTATCGCC CTGGCCTACC GGGCAGTGAT GGCCGGTATC AAAACCCGCT TCGTCACGGC GGCTGACTTG ATGCTGCAAC TGACCGCTGC GCACCGCCAG GAACGGCTCA AGGAATACTT CAGTCGTGTG GTGATGGCCC CTGGGTTGTT GGTCATCGAT GAAATCGGCT ACCTGCCGTT TGGTCGTGAT GAAGCCAACC TGTTCTTCAA TGTTGTCGCC AAGCGCTACG AGCAAGGCAG CCTGATCCTC ACGAGTAACT TGCCGTTTAC CCAGTGGGCC GGAACCTTTG CGGATGATCA AACACTGACA GCGGCCATGC TGGACAGGCT GTTACATCAT GCCCATATCG TGCAGATGAC AGGTGAAAGC TATCGACTCA AGGACAAGCG CAAAGCAGGA ACCAAATCTT CTCGGGCCGA ACCGGCTCGA AAATATGAAC CCGAGGGGGG TCAAAACTAA
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Protein sequence | MNLQHARLTE LCKGLKLERV GVDWPHLAQQ AASGEDSFAD FLEKLLAAET DARSERSRQA LLKTAALPAV KTLEQYDFAF ATGVPRAQLQ ELAALSFVGR AENIVFLGPS GVGKSHLAIA LAYRAVMAGI KTRFVTAADL MLQLTAAHRQ ERLKEYFSRV VMAPGLLVID EIGYLPFGRD EANLFFNVVA KRYEQGSLIL TSNLPFTQWA GTFADDQTLT AAMLDRLLHH AHIVQMTGES YRLKDKRKAG TKSSRAEPAR KYEPEGGQN
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