Gene PSPTO_3122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3122 
Symbolgnd 
ID1184779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp3507739 
End bp3508713 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content61% 
IMG OID637394480 
Product6-phosphogluconate dehydrogenase 
Protein accessionNP_792914 
Protein GI28870295 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1023] Predicted 6-phosphogluconate dehydrogenase 
TIGRFAM ID[TIGR00872] 6-phosphogluconate dehydrogenase (decarboxylating)
[TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.141391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACTTG GGATTATTGG ACTGGGCCGC ATGGGCGGCA ACATTGCACG GCGACTGATG 
CTGGATGGTC ACACTACAGT GGTGTATGAC CGCGATGAGG CATCACGCGG CGCCTTGGCC 
AATGAGGGCT CTACTGCCGT CGCTGATCTG GCGGAACTGG TGAGTGCACT GGAAAAGCCC 
CGTGCAGTCT GGGTCATGCT CCCGGCAGGC GCTCCGACCG AAGACACCAT TCAGACCCTC 
AGTCAGTTGC TTGAAGCCGA CGACGTGATC ATCGATGGCG GTAACACCTT CTACAAGGAC 
GACATTCGTC GTGCGCAGGA ACTGAGCGAA AAAGGCCTGC ACTATGTCGA TGTCGGCACG 
TCCGGTGGCG TCTGGGGCCT TGAACGCGGC TACTGCATGA TGATCGGTGG CGACGTGGCG 
GCAGTCGAGC GTCTTGATCC GCTGTTCGCG TCCCTCGCAC CCGGCCTTGG TTCGATCGAG 
CGCACTCGCG GTCGTACCTC GACCGACGAC CGCGCAGAGC GTGGCTACAT CCACTCAGGC 
CCTGCAGGTT CGGGGCATTT CGTGAAGATG ATCCACAACG GCATCGAGTA CGGAATGATG 
CAGGCCTTCG CCGAAGGCTT CGACCTGCTC AAGCAGAAAA ACTCCGAGCA TCTGCCGGCC 
GAGCAGCGTT TCGACCTCAA CACTGCAGAC ATTGCCGAGG TCTGGCGTCG TGGCAGTGTG 
GTTTCATCCT GGCTGCTCGA CCTGACCGCC GATGCCCTGG CGACTGACCC GCAACTCGAC 
GCTTTTTCCG GCTCGGTCGC CGACAGTGGT GAAGGACGCT GGACCATCGA GGCGGCGATC 
GAGCAGGCCG TACCGGTTCC GGTGCTCTCC AGCGCCTTGT TCGCGCGCTT CCGCTCCCGT 
CAGACAAGCT CGTATGCAGA CAAGATGCTG TCTGCCATGC GCTTTGGATT TGGTGGCCAC 
AAGGAACCCA AGTAA
 
Protein sequence
MQLGIIGLGR MGGNIARRLM LDGHTTVVYD RDEASRGALA NEGSTAVADL AELVSALEKP 
RAVWVMLPAG APTEDTIQTL SQLLEADDVI IDGGNTFYKD DIRRAQELSE KGLHYVDVGT 
SGGVWGLERG YCMMIGGDVA AVERLDPLFA SLAPGLGSIE RTRGRTSTDD RAERGYIHSG 
PAGSGHFVKM IHNGIEYGMM QAFAEGFDLL KQKNSEHLPA EQRFDLNTAD IAEVWRRGSV 
VSSWLLDLTA DALATDPQLD AFSGSVADSG EGRWTIEAAI EQAVPVPVLS SALFARFRSR 
QTSSYADKML SAMRFGFGGH KEPK