| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3089 |
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| Symbol | nikB |
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| ID | 1184746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3472110 |
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| End bp | 3473060 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637394449 |
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| Product | nickel ABC transporter, permease protein |
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| Protein accession | NP_792883 |
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| Protein GI | 28870264 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.175953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCGTT ATATCCTCGG CCGAATCGCG CAGGCGTTGC TGGTGCTCTG GGGTGCCTAC
AGCATCACCT ATTTCATTCT ATACCTGCTG CCCGGTGACA CGCTGTCGAT CATGCTCAGC
GCTTCCGGTG TTGAAATCGA CTCGCTGTCC GCGCAGGACC TTGCCAAGGC CAAGTTGTAT
TACGGGCTGG ATCGCGGGGT TTTCGAGCAG TACTTCGACC TGTTGTGGGG CGCGATTCAC
GGCGATTTTG GCAATTCGCT GACCCTCAAC CGCCCGGTCT CGGAACTGCT CGTCGAGCGT
CTGCCGCAAA CCCTGAGCCT GGCGGGCCTG GCTATCGTGC TGTCGCTGAT CGGCGGGATC
GGTCTGGCGT ACCTCACCGC CTACGTGCGC TGGCAGCCGC TGAAAGTGGC GCTGTCACGC
TTGCCGTCGC TGGGCTTCTC GGTGCCGGTG TTCTGGATGG GCCTGCTGTT CATCCAGTTG
TTCGCGTTCA GCCTTGGCTG GTTCCCGGCG ACCGGCAATC AGGGCTTCGC CAGCCTGATC
CTGCCCGCCG TCACGCTGGC GATCCCCAGC GCTGCGGTGT ACGCGCAGGT CCTGCAACGC
GGCTTTCAGG GCGTGTGGAA AGAACCCTAC ATCATTACCG CCTACGCCAA AGGCCTGACC
CGCGCGCAGG TTCAGGCCCG CCATGCGTTC AAGAACGCCG CCCTGCCGCT GTTGACGCTG
ATCGGTCTGC AAGTGGGCAA CACGGTTTCC GGGGCCGTGC TGGTGGAAAC CATCTTCGCC
CGCGCCGGGG TCGGCCGTCT GGCTCAGGAA GCCGTGCTGC GCCAGGACAT TCCAGTGGTA
CTGGCCATCG TTGCGGTTTC GGCCGCAGCC TTCGTTGTGG TCAATCTGAT TGTTGACCTG
CTGTACCCCG CGCTGGATCC GCGCATCGCC CATATGCCAA AGGTCTCCTG A
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| Protein sequence | MSRYILGRIA QALLVLWGAY SITYFILYLL PGDTLSIMLS ASGVEIDSLS AQDLAKAKLY
YGLDRGVFEQ YFDLLWGAIH GDFGNSLTLN RPVSELLVER LPQTLSLAGL AIVLSLIGGI
GLAYLTAYVR WQPLKVALSR LPSLGFSVPV FWMGLLFIQL FAFSLGWFPA TGNQGFASLI
LPAVTLAIPS AAVYAQVLQR GFQGVWKEPY IITAYAKGLT RAQVQARHAF KNAALPLLTL
IGLQVGNTVS GAVLVETIFA RAGVGRLAQE AVLRQDIPVV LAIVAVSAAA FVVVNLIVDL
LYPALDPRIA HMPKVS
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