Gene PSPTO_3039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3039 
Symbol 
ID1184696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3419246 
End bp3420268 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content62% 
IMG OID637394400 
Productalcohol dehydrogenase, zinc-containing protein 
Protein accessionNP_792834 
Protein GI28870215 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00916865 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCGCA CGATCCGTTT TCACCAGTTC GGCCCGGCCG AGGTGCTCAA GCTTGAAGAG 
CAGCCCGTCG CGTCGCCTGC ACCCGGCGAG GTGCAGGTTC GCGTCCAGGC TATCGGTGTC
AGCTGGTACG ACGTTCTATG GCGGCAAAAC CTCGCCTCTA CCCAGGCGCG GCTGCCTGCC
GGGCTGGGTT ACGAGATGGC TGGCGTGGTC ACTGCGCTGG GCGACGGGGT CGATGATCTG
CAGGTGGGTG ACAAGGTCGC CAGCTTCCCT GCGGCCGATG CCAATCAGCA TCCGGTTTAT
GGCGAATGCA TCGTCATGCC GCGCCTGGCG CTGACCCGCT ACCCGGATGT GCTGACGCCT
GTCGAAGCCA GTGTGCATTA CACGCCGTAT CTGGTGGCGT ACTTTGCCTA CGTCGATCTG
GCGCGCATCA AGGCTGGCCA GACGGTGTTG GTCACCGACG CCAGCCATTG TTCCGGTCCT
GCGTTCGTGC AGTTGGGCAA GGCGCTGGGT GTTCGTGTCA TCGCCGCGAC CAAGACCGAA
GATGCGCGTG AGTACCTGCT TTTGCTGGGT GCCGACAAGG TGGTAGTCAC CGAAGAGCAG
GACTTGCTGA TGGCAATCAA CAAGTACACC GACAATCGCG GCGTCGATGC GGTTTTCGAT
GGCCTCGGTG GCCCGCAGAT GTCGATTATG GGTGATGTGC TCGCGCCACG CGGCAGTCTG
GTGCTGTATG GCCTGCAAGG CGGCAATCAG ACGCCGTTCC CGGCTTGCGC AGCCTTCCAG
AAGAACATCC AGTTTTACGT GCACTGCCTG GGCAACTTCA CCGGCAAGCC GGAATTGGGC
ATCACTCAGG ATCAGCAGGC GTTGCAGCGT GCGTTGCGGG ATATCAACCA GATGACCGCC
GACAATATCC TGAAGCCGTT GCAGACGCGC AGCTTCCCGT TCGATCAAGT GGTGCAGGCG
CACCGTTACA TGGATGTCTG TCCGATCGGC GGGCGTGCGG TGCTGGAAAT CGAGCCCGTC
TGA
 
Protein sequence
MSRTIRFHQF GPAEVLKLEE QPVASPAPGE VQVRVQAIGV SWYDVLWRQN LASTQARLPA 
GLGYEMAGVV TALGDGVDDL QVGDKVASFP AADANQHPVY GECIVMPRLA LTRYPDVLTP
VEASVHYTPY LVAYFAYVDL ARIKAGQTVL VTDASHCSGP AFVQLGKALG VRVIAATKTE
DAREYLLLLG ADKVVVTEEQ DLLMAINKYT DNRGVDAVFD GLGGPQMSIM GDVLAPRGSL
VLYGLQGGNQ TPFPACAAFQ KNIQFYVHCL GNFTGKPELG ITQDQQALQR ALRDINQMTA
DNILKPLQTR SFPFDQVVQA HRYMDVCPIG GRAVLEIEPV