Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3039 |
Symbol | |
ID | 1184696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3419246 |
End bp | 3420268 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394400 |
Product | alcohol dehydrogenase, zinc-containing protein |
Protein accession | NP_792834 |
Protein GI | 28870215 |
COG category | [C] Energy production and conversion [R] General function prediction only |
COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00916865 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCGCA CGATCCGTTT TCACCAGTTC GGCCCGGCCG AGGTGCTCAA GCTTGAAGAG CAGCCCGTCG CGTCGCCTGC ACCCGGCGAG GTGCAGGTTC GCGTCCAGGC TATCGGTGTC AGCTGGTACG ACGTTCTATG GCGGCAAAAC CTCGCCTCTA CCCAGGCGCG GCTGCCTGCC GGGCTGGGTT ACGAGATGGC TGGCGTGGTC ACTGCGCTGG GCGACGGGGT CGATGATCTG CAGGTGGGTG ACAAGGTCGC CAGCTTCCCT GCGGCCGATG CCAATCAGCA TCCGGTTTAT GGCGAATGCA TCGTCATGCC GCGCCTGGCG CTGACCCGCT ACCCGGATGT GCTGACGCCT GTCGAAGCCA GTGTGCATTA CACGCCGTAT CTGGTGGCGT ACTTTGCCTA CGTCGATCTG GCGCGCATCA AGGCTGGCCA GACGGTGTTG GTCACCGACG CCAGCCATTG TTCCGGTCCT GCGTTCGTGC AGTTGGGCAA GGCGCTGGGT GTTCGTGTCA TCGCCGCGAC CAAGACCGAA GATGCGCGTG AGTACCTGCT TTTGCTGGGT GCCGACAAGG TGGTAGTCAC CGAAGAGCAG GACTTGCTGA TGGCAATCAA CAAGTACACC GACAATCGCG GCGTCGATGC GGTTTTCGAT GGCCTCGGTG GCCCGCAGAT GTCGATTATG GGTGATGTGC TCGCGCCACG CGGCAGTCTG GTGCTGTATG GCCTGCAAGG CGGCAATCAG ACGCCGTTCC CGGCTTGCGC AGCCTTCCAG AAGAACATCC AGTTTTACGT GCACTGCCTG GGCAACTTCA CCGGCAAGCC GGAATTGGGC ATCACTCAGG ATCAGCAGGC GTTGCAGCGT GCGTTGCGGG ATATCAACCA GATGACCGCC GACAATATCC TGAAGCCGTT GCAGACGCGC AGCTTCCCGT TCGATCAAGT GGTGCAGGCG CACCGTTACA TGGATGTCTG TCCGATCGGC GGGCGTGCGG TGCTGGAAAT CGAGCCCGTC TGA
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Protein sequence | MSRTIRFHQF GPAEVLKLEE QPVASPAPGE VQVRVQAIGV SWYDVLWRQN LASTQARLPA GLGYEMAGVV TALGDGVDDL QVGDKVASFP AADANQHPVY GECIVMPRLA LTRYPDVLTP VEASVHYTPY LVAYFAYVDL ARIKAGQTVL VTDASHCSGP AFVQLGKALG VRVIAATKTE DAREYLLLLG ADKVVVTEEQ DLLMAINKYT DNRGVDAVFD GLGGPQMSIM GDVLAPRGSL VLYGLQGGNQ TPFPACAAFQ KNIQFYVHCL GNFTGKPELG ITQDQQALQR ALRDINQMTA DNILKPLQTR SFPFDQVVQA HRYMDVCPIG GRAVLEIEPV
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