| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3002 |
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| Symbol | xylA |
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| ID | 1184658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3375268 |
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| End bp | 3376584 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394364 |
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| Product | xylose isomerase |
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| Protein accession | NP_792799 |
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| Protein GI | 28870180 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2115] Xylose isomerase |
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| TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.123977 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTACT TCCCCACTGT CGACAAGGTT ATCTACGAAG GCCCCGACAG CGACTCGCCG
CTTGCCTTTC GCCACTACGA CGCCGACAAA CGGGTGCTCG GCAAACCCAT GCGCGAACAC
CTGCGCATGG CTGCCTGTTA CTGGCACACC TTCGTCTGGC CGGGGGCTGA CATGTTTGGC
GTTGGCACCT TCAAACGCCC ATGGCAACGC GCCGGTGACC CGATGGAGCT GGCTATCGGC
AAGGCCGAGG CAGCGTTCGA ATTCTTCTCC AAGCTGGGCA TTGATTACTA CAGTTTCCAC
GACACCGATG TAGCGCCGGA AGGCAGCTCG ATAAAGGAAT ACCGCAATAA CTTTGCACAG
ATGGTCGACC GCCTCGAGCG GCATCAGGAG CAGAGCGGCA TCAAGCTGCT GTGGGGCACG
GCCAACTGTT TCAGCAACCC GCGTTTTGCC GCAGGTGCTG CCAGCAACCC GGACCCTGAA
GTATTTGCCT ACGCTGGCGC CCAGGTGTTC AGTGCGATGA ACGCCACCCA GCGCCTCAAA
GGCTCCAACT ACGTGCTGTG GGGCGGTCGT GAAGGTTACG AAACCCTGCT CAATACCGAC
CTCAAGCGCG AACGCGAGCA ACTCGGTCGC TTCATGCGCA TGGTGGTCGA GCACAAGCAC
AAGATAGGTT TCAAAGGTGA TCTGCTGATT GAACCCAAAC CACAGGAGCC GACCAAGCAT
CAGTACGATT ACGACAGCGC CACGGTATTC GGTTTTCTTC ACCAGTACGG CCTGCAGGAC
GAGATCAAGG TTAACATCGA AGCCAACCAT GCCACGCTGG CCGGGCACAG CTTCCATCAC
GAAATCGCCA CGGCGGTCTC GCTGGGGATC TTCGGCAGCA TCGACGCCAA TCGCGGCGAC
CCGCAGAACG GCTGGGACAC CGACCAGTTC CCCAATAGCG TCGAGGAAAT GACCCTCGCC
ACCTATGAAA TTCTCAAGGC CGGTGGTTTT ACCCATGGCG GCTACAATTT CGACTCAAAG
GTCCGCCGTC AGAGCCTGGA CGATGTCGAT CTGTTCCATG GCCACGTTGC CGCCATGGAC
GTCCTTGCCC TCTCGCTGGA GCGCGCTGCG GCGATGGTGC AGAACGATAA ACTTCAACAA
TTCAAGGACC AGCGTTACGC AGGCTGGCAG CAGCCGTTCG GCCAATCGGT GCTGAGCGGA
GGTTTCAGCC TCGCGTCGCT GGCCGAACAT GCGTTCGCCA ACGAACTGAA CCCGCAGGCC
GTCAGCGGTC GGCAGGAGTT GCTCGAAGGT GTGGTCAACC GCTTTATCTA CACCTGA
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| Protein sequence | MSYFPTVDKV IYEGPDSDSP LAFRHYDADK RVLGKPMREH LRMAACYWHT FVWPGADMFG
VGTFKRPWQR AGDPMELAIG KAEAAFEFFS KLGIDYYSFH DTDVAPEGSS IKEYRNNFAQ
MVDRLERHQE QSGIKLLWGT ANCFSNPRFA AGAASNPDPE VFAYAGAQVF SAMNATQRLK
GSNYVLWGGR EGYETLLNTD LKREREQLGR FMRMVVEHKH KIGFKGDLLI EPKPQEPTKH
QYDYDSATVF GFLHQYGLQD EIKVNIEANH ATLAGHSFHH EIATAVSLGI FGSIDANRGD
PQNGWDTDQF PNSVEEMTLA TYEILKAGGF THGGYNFDSK VRRQSLDDVD LFHGHVAAMD
VLALSLERAA AMVQNDKLQQ FKDQRYAGWQ QPFGQSVLSG GFSLASLAEH AFANELNPQA
VSGRQELLEG VVNRFIYT
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