Gene PSPTO_2988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2988 
Symbol 
ID1184644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp3359635 
End bp3360702 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content61% 
IMG OID637394350 
Productbranched-chain amino acid ABC transporter, permease protein 
Protein accessionNP_792785 
Protein GI28870166 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.475714 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGTTTC AAGAAGCCGG ACAACTGGCG AGTACGTATG CAGGCGAGCG GCGCATCTTT 
CGCCTGCGTC AGGACCGTGT CGCCCTTTGG GGGCTGTTGG TTTTTGCGTT CGTTGGCGTG 
CCGTTGCTGG GCAACGATTA CTGGTTCAGC GCGATTCTGA TTCCGTTTCT AGTGCTCTCG 
CTGGCGGGGC TCGGACTGAA CCTGCTGACC GGATACGCCG GGCAATTGTC GCTGGGCTCG 
GCGGCGTTCA TGGCGGTGGG CGCGTTTGCT GCCTATAACC TGCAACTGCG CGTGCCGGGT 
ATGCCGCTGT TGCTTGGGTT TGCACTCGGC GGTCTGGTGT CGGCGGCGGT GGCGTTGCTG 
TTCGGACTGC CCAGTCTGCG CATCAAGGGC TTTTACCTGC TGGTCTCGAC ATTGGCGGCG 
CAGTTTGTCG TCGAGTGGGT GTTGACCCGT TTCAGCTGGT TTACCAACGA CAACGCATCG 
GGGGTGATCA CCTCGCCACC GTTGATCATC GCCGGGATGA ATTTCAGTTC GCCGCAAGGC 
CGTTATCTGT TGACGCTGGC GCTGGTGGTG CTGCTGTTCT GGCTGGCCAG AAACCTGCTG 
CGCGGCGAAC TGGGTCGCAA CTGGATGGCC GTGCGCGACA TGGACACCGC TGCTGCGGTC 
ATTGGCATCC GCCTGTTCAA GGCCAAGCTG CTGGCATTCG CCATCAGCGG CTTCTACCTG 
GGTATCGCCG GCTCGTTGTG GGCGTTTGCC TATCTGGGCA CGGTCGAGCC GCATGGCTTT 
GATCTGAACC GGTCATTCCA GATCCTGTTC ATCATCATTA TCGGCGGGCT GGGCAGTGTG 
CAAGGCAACT TCTTCGGTGC GGCCTTCATC GTGCTGTTCC CGATTTTGCT GGGCAACCTC 
AGCGCCCAGC TGCCGGTCGG CCTGATCGAT TCCGGGCAAC TGGAAAACAT TCAGAAGATG 
CTTTTCGGCG CGTTGATCAT TGCCTTTCTG ATCAAGGAGC CCGAAGGGCT GGCGCGCCTC 
TGGCAGCGCT TTCGCCAGCG TGCGCGGGTC TGGCCGCTGC GTTATTGA
 
Protein sequence
MLFQEAGQLA STYAGERRIF RLRQDRVALW GLLVFAFVGV PLLGNDYWFS AILIPFLVLS 
LAGLGLNLLT GYAGQLSLGS AAFMAVGAFA AYNLQLRVPG MPLLLGFALG GLVSAAVALL 
FGLPSLRIKG FYLLVSTLAA QFVVEWVLTR FSWFTNDNAS GVITSPPLII AGMNFSSPQG 
RYLLTLALVV LLFWLARNLL RGELGRNWMA VRDMDTAAAV IGIRLFKAKL LAFAISGFYL 
GIAGSLWAFA YLGTVEPHGF DLNRSFQILF IIIIGGLGSV QGNFFGAAFI VLFPILLGNL 
SAQLPVGLID SGQLENIQKM LFGALIIAFL IKEPEGLARL WQRFRQRARV WPLRY