Gene PSPTO_2952 details

Gene Information

• Locus tag: PSPTO_2952
• ID: 1184606
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3317979
• End bp: 3320042
• Gene Length: 2064 bp
• Protein Length: 687 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637394312
• Product: glycosidase, putative
• Protein accession: NP_792749
• Protein GI: 28870130
• TIGRFAM ID: [TIGR02455] trehalose synthase, Pseudomonas stutzeri type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00638386
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGATAC CGGACAAGCA GTACGTGGAC TGGCTGGTCG AGCAATCGAT GCTTAATGCC 
GCAAGACAGC GCGCCAAGAC CTATTCGGGG CAGGGCAGGC TCTGGCAGCG TCCATTCGCG 
CTGGCACGTC CCAGAGACGC CTCTGCCATC GCCTCGGTCT GGTTCACGGC CTACCCGGCG 
TCAATCGTCA CTCGCGAAGG CGGCTCGGTG CTTGAAGCGC TGGGCGACGA AACCTTGTGG 
CACGCGCTGT CCGAGATCGG CATTCAGGGG ATTCACAACG GGCCGCTGAA ACTGTCCGGC 
GGGCTGAAGG GCCGCGAGCG GACGCCAAGT ATCGATGGCA ACTTCGACCG CATCAGCTTC 
GGCATCGACC CGGACCTGGG CACCGAGGCG CAACTGCTGA GCCTGTCGCG CATCGCTGCG 
GCGCACAACG CAGTGATCAT TGACGACATC ATCCCGTCGC ACACCGGCAA AGGTGCAGAT 
TTCCGTCTCG CCGAGATGGC GTACGAGGAT TACCCCGGCC TGTTCCACAT GGTCGAGATT 
CGTGAAGAAG ACTGGCCGTT GTTGCCCGAG GTCGCGGCTG GCCGCGACGC CGTCAACCTG 
ATGCCCGAGG TGGTCGACCA ACTGCGCGAC AAGCATTACA TCGTCGGCCA GTTGCAGCGC 
GTTATTTTCT TCGAGCCCGG CGTCAAGGAA ACCGACTGGA GTGCCACTGA TGTGGTGCAA 
GGCGTCGATG GCAAGGCCCG GCGCTGGGTT TATCTGCACT ACTTCAAGGA CGGCCAGCCC 
TCACTGAACT GGCTGGACCC AAGCTTTGCC GCGCAGCAGA TGATCATTGG TGATGCGCTG 
CATGCTATTG ATGTCATGGG CGCACGGGTA TTGCGCCTGG ACGCCAACGG CTTTCTGGGT 
GTCGAACGTC GCGCCGAAGG CACTGCCTGG TCGGAAAGTC ATCCGCTGTC GATCACTGGC 
AACCAATTGC TGGCCGGGGC AATCCGCAAG GCGGGCGGCT TCAGCTTTCA GGAACTGAAC 
CTGACCATTG ATGACATCGC GTCCATGGGC CAGGGCGGTG CTGATCTGTC TTACGACTTC 
ATTACACGCC CGGCTTATCA GCATGCGCTG CTGACCGGCA CCACCGAATT CCTGCGCTTG 
ATGCTACGTC AGGTTCATGC GTATGGCATT GATCCCGCTT CGCTGATCCA CGCCTTGCAG 
AACCACGACG AACTGACCCT GGAACTGGTG CATTTCTGGA CGCTGCACGC CCACGACACG 
TTCCACTATC AGGGTCAGAC GTTCCCCGGC AACATTCTGC GTGAGCACAT CCGCGAAGAA 
ATGTACGAGA AGCTTTCCGG CGAACACGCG CCTTACAACC TCAAGTTCGT CACCAACGGC 
GTGTCCTGCA CGACGGCAAG CATCATCACG GCGGCACTGG GCATTCGGGA CCTGAGCACG 
ATTACTGATG CCGACACTCA GCAGATCCAG CACATTCACC TGTTGCTGGT GATGTACAAC 
GCCATGCAGC CGGGTGTGTT CGCGCTGTCT GGCTGGGACC TGGTCGGCGC GCTGACGCTT 
CCGGCCGAGC AGGTCGAGCA CCTCATGCAG GACGGTGATA CGCGGTGGGT GCACCGTGGC 
GCCTATGATC TGGTCGATCT GGACCCGGAA GCCGAGTTTT CTGCTGGCGA CATGCCGCGT 
CCGAAGACGC TGTATGGCAG CCTGGTCAGT CAGCTCCAGC GGCCTGACTC GTTTGCCTCG 
CAGCTCAAGA AGATTCTTGC CGTGCGTCGC GCCTACGACA TCGCCGCGAG CCGCCAGATT 
CTGATCCCGG ATGTCGAGCA TCCGGGGCTG TTGGTCATGG TTCACGAGTT ACCGGCGGGC 
AAGGGCACGC AGATTACCGC GCTCAATTTC AGCGCCGAGA CCCTCGTTGA AACGCTGCAC 
TTGCCGGGCA TCGCGCCAGG CCCTGTAGTC GACATCATCA ACGAGCGGGT TGAAGGCGAT 
CTGACCGAGC AGGGTGAGTT CACCATCACC CTGGACGCCT ACGAAGGCCT CGCCCTGCGC 
GTGGTCAGCA CCTTGCCGAT CTGA 

 

Protein sequence

MTIPDKQYVD WLVEQSMLNA ARQRAKTYSG QGRLWQRPFA LARPRDASAI ASVWFTAYPA 
SIVTREGGSV LEALGDETLW HALSEIGIQG IHNGPLKLSG GLKGRERTPS IDGNFDRISF 
GIDPDLGTEA QLLSLSRIAA AHNAVIIDDI IPSHTGKGAD FRLAEMAYED YPGLFHMVEI 
REEDWPLLPE VAAGRDAVNL MPEVVDQLRD KHYIVGQLQR VIFFEPGVKE TDWSATDVVQ 
GVDGKARRWV YLHYFKDGQP SLNWLDPSFA AQQMIIGDAL HAIDVMGARV LRLDANGFLG 
VERRAEGTAW SESHPLSITG NQLLAGAIRK AGGFSFQELN LTIDDIASMG QGGADLSYDF 
ITRPAYQHAL LTGTTEFLRL MLRQVHAYGI DPASLIHALQ NHDELTLELV HFWTLHAHDT 
FHYQGQTFPG NILREHIREE MYEKLSGEHA PYNLKFVTNG VSCTTASIIT AALGIRDLST 
ITDADTQQIQ HIHLLLVMYN AMQPGVFALS GWDLVGALTL PAEQVEHLMQ DGDTRWVHRG 
AYDLVDLDPE AEFSAGDMPR PKTLYGSLVS QLQRPDSFAS QLKKILAVRR AYDIAASRQI 
LIPDVEHPGL LVMVHELPAG KGTQITALNF SAETLVETLH LPGIAPGPVV DIINERVEGD 
LTEQGEFTIT LDAYEGLALR VVSTLPI