Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2876 |
Symbol | |
ID | 1184530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3238825 |
End bp | 3240048 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637394240 |
Product | ABC transporter, permease protein, putative |
Protein accession | NP_792677 |
Protein GI | 28870058 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0331107 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAACCGGC CTTTTAAGCG TCTTGGCCTG CTGGCACGCC TGGCCATTGC AGACCTGTGG CACGACCGTA AAGTGTCGCT GTGCATTGCC GCTTCGCTGG TCGCCGTGAT CGCGCCGTTG CTGCTGCTGT TCGGCCTCAA ACATGGCGTG GTCGGCCAAC TGCAGGCAGA ACTGCTGCGC GACCCACGCA ACCTTGAAAT CAAGTTGCTC AGCAGTGGCA ACTACGACGA GCAGTGGCTG AACAGGCTGC AACAGCGGCC CGAAACCGGC TTTGCCCTTG GCATGACCCG CTCGCTCAAC ACCCAGGCCG ACCTGATCGG CAGTCGCGGT CGCTTTGTCG ACAACGCCGA AATCCTGCCC ACCGGGCCGG GTGACCCTTT ACTGGCTGCA CAGGCCATGG CCATCCTGCC GGGCCAGGTG ATTCTCAGCA ACGCCGCTGC CGAGCGTTTG GCGCTGGTCC CCGGCGATAC GCTGCGTCTG GCCGTGCAGC GTCGTCTGGA CGGCGCGCCC GAACGAGGCG AAACCACGCT GACGCTGGTC GCTGTGTTGC CGGCAGCCCG CTTTTCCAGG CCCGCCGCAT TTGCCCATCC CGATCTGTTG CTGCAACTGG AGCATTTTCG AGACGGTTTT GCGATTTCTG CCCTCGGTGC CACCCGCGGT CAGGCAGAAG ACCAGCTTGC GCCCCGCTAC GCCCGCGCTC GTCTGTACGC CCGTGACATC GACAGCGTCG CGCCACTGGA GCGCTGGTTG AACGAGCAAC ATATCGAAAC AGGCAGCCGG CTGGCCGATA TCGACAATGT CAAAGCCATC AATCACGTGC TGAGCGTGAT CTTCGGCGTG ATCGCCGGGG CCGCTTTGCT GGGCTGCATC GCTTCGCTGA TAGGCGCCTT CCTCGCGAAC ATCGATCGCA AACGCCGCAG CCTCGCCTTG TTGCGGCTCA TGGGCTTCAC CGCGCCCGCA GTGGCGGGCT ATCTGGTCCT GCAGGCATTG CTGCTGGCCG TAGTCGGCTA TGTCGGCGGC CTGGGGTTCT ACTTTGCCGG CAGCGAGGCG TTCAATCACC TGCTGGGCGG CCAGCGCATC ACCGGCGGTT TCATTTGCCA GATCACCCCG TTGCACGGCC TTGCCGCACT GGCGCTTGCG CTGGTGGTAT CAGCGCTGGT TGCGCTGGCA GGTGCCACCC GAGCCATCCG AATTCAACCT GCGGAGAGTC TGCGTGAACT CTAG
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Protein sequence | MNRPFKRLGL LARLAIADLW HDRKVSLCIA ASLVAVIAPL LLLFGLKHGV VGQLQAELLR DPRNLEIKLL SSGNYDEQWL NRLQQRPETG FALGMTRSLN TQADLIGSRG RFVDNAEILP TGPGDPLLAA QAMAILPGQV ILSNAAAERL ALVPGDTLRL AVQRRLDGAP ERGETTLTLV AVLPAARFSR PAAFAHPDLL LQLEHFRDGF AISALGATRG QAEDQLAPRY ARARLYARDI DSVAPLERWL NEQHIETGSR LADIDNVKAI NHVLSVIFGV IAGAALLGCI ASLIGAFLAN IDRKRRSLAL LRLMGFTAPA VAGYLVLQAL LLAVVGYVGG LGFYFAGSEA FNHLLGGQRI TGGFICQITP LHGLAALALA LVVSALVALA GATRAIRIQP AESLREL
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