Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2860 |
Symbol | |
ID | 1184514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3218240 |
End bp | 3219619 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637394224 |
Product | helicase domain protein |
Protein accession | NP_792661 |
Protein GI | 28870042 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00993541 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATGCTT CAGAGAAAAT CCTCAACGCC CGCGCCTGGC TAAACTCAGA ACCAAAAGTG ATCGGACTGC GCGATGAGGG TCTTTGGTCG GACTTGCATG ACCGGATTAT CGAAGGGGCG TCTTACTTCC GTACTGCGGA GCACTCTGCC CAACAACCCA AAGCCAAGCT CAAGTCCTAC GAGACTCAGT TCCGTTCAGG TCACATCAAT CTGTTGAGCT GCTCGACCAC CATGGAGATG GGTATCGACA TCAGCGGTAT CACGGCCGTC GCGATGAACA ACGTACCGCC CCAGACGGCA AACTACTTGC AGCGGGCAGG CCGGGCGGGA CGACGCGGGG AAGGACGCGC GGTTGCGTTA ACCATTTGCC GCAAGACACC CCACGACCAG CACGTGTTCG CCAAGCCCCG GTGGCCGTTC GATACAAACA TGATCATTCC GGCCGTCTCA CTGCGAAGCC CAGATCTGGT CGCGCGCCAC GTCAACTCCT ACCTTTTGTC TTACTGGCTC AAGACAGTAT TGGGGCGAGA GGAGCTCAAA AGCATGACTA TAGGCCCCTT CTGCATCGAG GAAGGTGGCG ATTCCCTGGC GGGTCGATTC GAAGCTTGGT GCACGAATAC CGCGGGCATT TTGCCGGCTG TCATCAAAGG GATTGAGAAG CTGGTTCACC GCAGCCCGCT CGTGGACATG AACTCTGAAA CGCTAACTCG CCACACCGCA GCCGCAATGC GAGATGTCGC GCAGAGCTGG AGGGAGGATT ACAACAACGC CAGTCAGGAG CTCGGCTACT TCAAAGGCTG CTCAGAAAAG AAGAGCGCGG CATTGCGTGC GCTGAATGCT CAGCTGGAGC GGATCACCGG TGAGTACCTG TTGAGTGAGC TGGCAACTCG CCGGTTCCTG CCAGGTTACG GTTTTCCCAC AGACATCGTC AGCTTTAACA ACATCATCAG ACAGCCCCCG GACAAAGCGC GAGAATACTC GCGCGAAGAT AACCGCGGGC GCTACCTAGA TCTCGCGACA CGAGACCGTG TAACCGGGCT GAGAGAATAT GCACCTGGCG CCGAAGTTGT CATGGACGGT TGGGTTTATG AGTCGCGGGG TATCTCACTC AATTGGAGGC TTCCCGCGTC CGAAGAAATC CTGCGTGAAG CGCAGCTTTT CAAGTATGCG TGGCGTTGCT CCCATTGCGG CGCAAGCGGG AGTACCTTTG CGCAACAACC GGGCGACTGC GGGCAGTGTG GAAGTCCCTT GGACGAGCAG GAAGATGTTC TGCGCTATCT GGTGCCTTCA GGGTTCGCGG TGGACTTCTA CGGTAAGGAT CCGCACACAG ATATCAGTAA GCCTACCTAT ATCCCCGTCC AGCGCCCTTG GCTACGGTGA
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Protein sequence | MDASEKILNA RAWLNSEPKV IGLRDEGLWS DLHDRIIEGA SYFRTAEHSA QQPKAKLKSY ETQFRSGHIN LLSCSTTMEM GIDISGITAV AMNNVPPQTA NYLQRAGRAG RRGEGRAVAL TICRKTPHDQ HVFAKPRWPF DTNMIIPAVS LRSPDLVARH VNSYLLSYWL KTVLGREELK SMTIGPFCIE EGGDSLAGRF EAWCTNTAGI LPAVIKGIEK LVHRSPLVDM NSETLTRHTA AAMRDVAQSW REDYNNASQE LGYFKGCSEK KSAALRALNA QLERITGEYL LSELATRRFL PGYGFPTDIV SFNNIIRQPP DKAREYSRED NRGRYLDLAT RDRVTGLREY APGAEVVMDG WVYESRGISL NWRLPASEEI LREAQLFKYA WRCSHCGASG STFAQQPGDC GQCGSPLDEQ EDVLRYLVPS GFAVDFYGKD PHTDISKPTY IPVQRPWLR
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