| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2831 |
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| Symbol | syfC |
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| ID | 1184485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3180168 |
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| End bp | 3181319 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394198 |
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| Product | syringolide efflux protein SyfC |
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| Protein accession | NP_792635 |
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| Protein GI | 28870016 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.580145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGGC CCGGATTGCG CAAGGCAGGT TGGGGCGGCG CGCTGCTGGC GGTGGCCTGT
GCGGTGTTTT ACGCCGTCGA AGCGCCGGCC AGAGCACCGG TCTACATCAC CGCTCAGGTT
GAACGAAGCG ACATCGAAAA CGCCGTGCTG GCCACCGGGG TGCTGGAGGG CATCAAACAA
GTGGACGTCG GCGCTCAGGT GTCTGGGCAG TTGAAGTCAC TCAAGGTCAA ACTGGGCGAC
AAGGTCAAGA AGGGCCAGTG GCTGGCCGAG ATCGACCCGC TGGTGCTGCG CAACACCCTG
CGCCAGGCCG AGGTGGACGA GGAAAAACTG CAGGCCGACC GGCATTCGGC GAAAGCTCAG
ATGAAACAGG CCGAACGGCT CTACAAACGC TACAAGGATT TACAGACCGA TCAGTCGGTA
TCCCGGCAGG ACTTTGAAAA TGCCGAATCC GACTACGAGA TGCAGCAGGC CAACGTGCGC
GCACTGGATG CCCAGATAAA GAGCGCACAG GTGCAGATCG ACACGGCGAA GGTCAACCTG
GGCTACACGC GAATCATCGC GCCAATCGAC GGCGATGTGG TCGGTGTCGT GACTCAGGAA
GGCCAGACCG TCATCGCCCA ACAACTGGCG CCGATCCTGC TGAAACTGGC TGATCTGGAC
ACCATGACCA TCAAGGCTCA GGTATCGGAA GCCGACGTCA TTCACATCGG CGCTGGCCAG
GAGGTCTATT TCACGATTCT CGGCGAGGAG AAACGCTATT ACGCCAAACT GCGCGGCACC
GAGCCCGCGC CACAGGATTA TCTGGAAACC GAGAGCAGCG GGGGGGCTTC CCGGCAGAAC
TCGGCGGTGT TCTACAACGC GCTGTTTGAA GTGCCCAACC TCGACCACCG CCTGCGCATT
GCCATGACGG CCCAGGTGCG CATCGTGCTG GGCACCGCCA AAGGTGCCTT GAGTGTGCCG
GTGGCCGCAC TCGGGCCGCG TAACGCCGAC GGTTCTTACG CCGTACGGGT GCTGGATAAC
AAGGGTTTCG CCGAGCAACG AAACGTTCAG ACCGGCATCA ACAACAACGT TCAGGTCGAA
ATAACCGGCG GGCTTGCCGA GGGCGAGCGG GTGGTAATCG GTGATCCGGC ATCGGTTGCG
GCGGGGGCCT GA
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| Protein sequence | MKRPGLRKAG WGGALLAVAC AVFYAVEAPA RAPVYITAQV ERSDIENAVL ATGVLEGIKQ
VDVGAQVSGQ LKSLKVKLGD KVKKGQWLAE IDPLVLRNTL RQAEVDEEKL QADRHSAKAQ
MKQAERLYKR YKDLQTDQSV SRQDFENAES DYEMQQANVR ALDAQIKSAQ VQIDTAKVNL
GYTRIIAPID GDVVGVVTQE GQTVIAQQLA PILLKLADLD TMTIKAQVSE ADVIHIGAGQ
EVYFTILGEE KRYYAKLRGT EPAPQDYLET ESSGGASRQN SAVFYNALFE VPNLDHRLRI
AMTAQVRIVL GTAKGALSVP VAALGPRNAD GSYAVRVLDN KGFAEQRNVQ TGINNNVQVE
ITGGLAEGER VVIGDPASVA AGA
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