| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2814 |
|---|
| Symbol | |
|---|
| ID | 1184468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3139118 |
|---|
| End bp | 3140683 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394181 |
|---|
| Product | peptide ABC transporter, periplasmic peptide-binding protein |
|---|
| Protein accession | NP_792618 |
|---|
| Protein GI | 28869999 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.1277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAC TCGTTCGTTC GTTACTGGCC TCGGCGCTCG TGCTGGCCGC CGGCAGTGTT
TCGGCGCAGG ACCTGCGCAT CGGTTATGCC GACCCCGTCT CGTCGCTCGA CCCGCAACTG
AACAACTATG CCGGCGACCG CTCGGTGGCG CTGCACGCCT TTGAATCGCT GGTCAGCCGC
CGTGACGACA AGACCTTGCC GGGCCTCGCG AAAAGCTGGA AAGTCACTGA CGACACCACT
TGGGAGTTTG CCCTGCGCGA GGACGTGAAG TGGCAGGACG GCACACCGCT GACCGCCGAC
GACCTGGTGT TCTCTTTCGA GCGAGCGCGC AGCGTGCCCG GTAGCGTTGC GTCTTACGCA
GGTGCCATGC GCACGGTCGA ATCGGTCAAG GCCAAGGATG ATCACACTCT GATCATCAAG
ACCCGCCTGC CCAACGCCAA CCTGCTGCCG GACGTCGATT CCATCTACAT CGTCAGCCGC
CATGCAGGCG CCGCCGCCAG CAGTGCCGAT TACAATTCGG GCAAAGCCCT GATCGGCACC
GGGCCTTATC GTTTTGTCTC GTTTGTACCG GGTGATCGTA CGATCTTTGC CCGCAACGAC
AGCTACTGGG GAGCGAAACC GACCTGGGAC AAAGTCGATT TCCGCTTTAT CGCCAATGCC
GCCAACCGCA CTGCGGCGTT GCTGGCGGGC GATGTGGATG TGATTGACAA GGTGTCGCCA
ACCGACGTCG AGCGTCTGCG CAAAACCCCG AGCGTCAATG TCTTCGCCTA TCAGGGCTTG
CGTGCGCTGA TCATTCAACC AAGCTTCCGC ACCGGCCCGA ACGAATTCAT TCGTGACAAC
GCCGGTAAAC CGCTGGCTGA GAACCCGTTG CTGGACGTGC GGGTGCGCAA GGCGTTGTCC
CTGGCGATCA ATCGCCCGGC CATCGACGAG CGCATCATGC AGGGCACCGT GACCGAGGCC
AATCAGTGGA TGCCGGCCAA TACCTTCGGT TACAACCCCG GCATCAAGAA CATCCCGTAT
GACGTCAAGC AGGCCAAGGA CCTGCTGGCA CAGGCGGGCT TTCCCGAGGG CTTTCAGTTG
ACCGTGCACG TACCGGGCGA CCGTTACCCG CAAGCGCCAG AAGTGATGCA GGCCGTTGCG
CAGTTCTGGA CACGAATCGG CGTCAAGGTG CAGCTGGAAG TGCTGCCGTG GGCAGTCTAC
GCAGGCAAGG CCAACAAGAA TGAGCTGGCA ATCAGCGTGA TTGCCTGGGG CAACGGCACC
GGTGAAGCGG CTTATGCACT GACCAATATT CTGACCACAG TGGACAGCAG CAAAGGGCAG
GGCGCGTCCA ACTGGGGGCA CTACAGCAAC CCGCTGGTGG ACAAGGCGCT GGCCGATTCG
ACGGCTGAAT TCGACGAGGC CAAACGCCGC AAGATCCTGG AAGACTCGGT CCAGGTGGTC
AGCGACGACG TTGGCATCAT CCCGTTGTTC CATTACCAGA ACATCTGGGA TGCGCGCAAA
GGCCTGAAAG TCGAGCCGCT GGTCAGCGAC CGCACTGCGG CGACCATGGT CACCGAACAG
CCGTGA
|
|---|
| Protein sequence | MKPLVRSLLA SALVLAAGSV SAQDLRIGYA DPVSSLDPQL NNYAGDRSVA LHAFESLVSR
RDDKTLPGLA KSWKVTDDTT WEFALREDVK WQDGTPLTAD DLVFSFERAR SVPGSVASYA
GAMRTVESVK AKDDHTLIIK TRLPNANLLP DVDSIYIVSR HAGAAASSAD YNSGKALIGT
GPYRFVSFVP GDRTIFARND SYWGAKPTWD KVDFRFIANA ANRTAALLAG DVDVIDKVSP
TDVERLRKTP SVNVFAYQGL RALIIQPSFR TGPNEFIRDN AGKPLAENPL LDVRVRKALS
LAINRPAIDE RIMQGTVTEA NQWMPANTFG YNPGIKNIPY DVKQAKDLLA QAGFPEGFQL
TVHVPGDRYP QAPEVMQAVA QFWTRIGVKV QLEVLPWAVY AGKANKNELA ISVIAWGNGT
GEAAYALTNI LTTVDSSKGQ GASNWGHYSN PLVDKALADS TAEFDEAKRR KILEDSVQVV
SDDVGIIPLF HYQNIWDARK GLKVEPLVSD RTAATMVTEQ P
|
|---|
| |